RNA–Protein interactions for RNA: ENST00000374253.9

CNKSR1-202, Transcript of connector enhancer of kinase suppressor of Ras 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CNKSR1, Length 2,538 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR1-202ENST00000374253 Q5PR19 223 aa12.1□□□□□ -0.47
CNKSR1-202ENST00000374253 HIST2H2BCQ6DN03 193 aa12.1□□□□□ -0.47
CNKSR1-202ENST00000374253 OR10J6PQ8NGY7 276 aa12.1□□□□□ -0.47
CNKSR1-202ENST00000374253 SVIPQ8NHG7 77 aa12.1□□□□□ -0.47
CNKSR1-202ENST00000374253 CRXO43186 299 aaPredicted RBP12.09□□□□□ -0.47
CNKSR1-202ENST00000374253 ZNF747Q9BV97 191 aa12.09□□□□□ -0.47
CNKSR1-202ENST00000374253 HSPB8Q9UJY1 196 aa12.09□□□□□ -0.47
CNKSR1-202ENST00000374253 FLNAP21333 2647 aaKnown RBP12.09□□□□□ -0.47
CNKSR1-202ENST00000374253 AKAP9Q99996 3911 aa12.09□□□□□ -0.47
CNKSR1-202ENST00000374253 KLHDC1Q8N7A1 406 aa12.09□□□□□ -0.47
CNKSR1-202ENST00000374253 G0S2P27469 103 aa12.08□□□□□ -0.48
CNKSR1-202ENST00000374253 RNASE4P34096 147 aaKnown RBP12.08□□□□□ -0.48
CNKSR1-202ENST00000374253 SRSF2Q01130 221 aaKnown RBP12.08□□□□□ -0.48
CNKSR1-202ENST00000374253 ZFAND2AQ8N6M9 145 aa12.08□□□□□ -0.48
CNKSR1-202ENST00000374253 CNFNQ9BYD5 112 aa12.08□□□□□ -0.48
CNKSR1-202ENST00000374253 AGRNO00468 2067 aa12.08□□□□□ -0.48
CNKSR1-202ENST00000374253 HOXA3O43365 443 aaPredicted RBP12.08□□□□□ -0.48
CNKSR1-202ENST00000374253 SMPXQ9UHP9 88 aa12.08□□□□□ -0.48
CNKSR1-202ENST00000374253 C20orf202A1L168 122 aa12.07□□□□□ -0.48
CNKSR1-202ENST00000374253 SPANXN1Q5VSR9 72 aa12.07□□□□□ -0.48
CNKSR1-202ENST00000374253 Q96MF0 132 aa12.07□□□□□ -0.48
CNKSR1-202ENST00000374253 ACANP16112 2415 aa12.07□□□□□ -0.48
CNKSR1-202ENST00000374253 BRI3O95415 125 aa12.07□□□□□ -0.48
CNKSR1-202ENST00000374253 TSPOP30536 169 aa12.07□□□□□ -0.48
CNKSR1-202ENST00000374253 C18orf15Q96N68 181 aa12.07□□□□□ -0.48
CNKSR1-202ENST00000374253 M0R381 172 aa12.06□□□□□ -0.48
CNKSR1-202ENST00000374253 TCF21O43680 179 aa12.06□□□□□ -0.48
CNKSR1-202ENST00000374253 TNFRSF6BO95407 300 aa12.06□□□□□ -0.48
CNKSR1-202ENST00000374253 HINT1P49773 126 aaPredicted RBP12.06□□□□□ -0.48
CNKSR1-202ENST00000374253 DEFB113Q30KQ7 82 aa12.06□□□□□ -0.48
CNKSR1-202ENST00000374253 IGKV3-20P01619 116 aa12.05□□□□□ -0.48
CNKSR1-202ENST00000374253 PET117Q6UWS5 81 aa12.05□□□□□ -0.48
CNKSR1-202ENST00000374253 LINC00477Q96M19 166 aa12.05□□□□□ -0.48
CNKSR1-202ENST00000374253 VPREB3Q9UKI3 123 aa12.05□□□□□ -0.48
CNKSR1-202ENST00000374253 OVOL1O14753 267 aa12.05□□□□□ -0.48
CNKSR1-202ENST00000374253 TCAPO15273 167 aa12.05□□□□□ -0.48
CNKSR1-202ENST00000374253 GNRH2O43555 120 aa12.05□□□□□ -0.48
CNKSR1-202ENST00000374253 SYNJ2BPP57105 145 aa12.05□□□□□ -0.48
CNKSR1-202ENST00000374253 ANXA2RQ3ZCQ2 193 aa12.05□□□□□ -0.48
CNKSR1-202ENST00000374253 J3QLI3 93 aa12.04□□□□□ -0.48
CNKSR1-202ENST00000374253 STPG4Q8N801 248 aa12.04□□□□□ -0.48
CNKSR1-202ENST00000374253 MAP1LC3AQ9H492 121 aa12.04□□□□□ -0.48
CNKSR1-202ENST00000374253 LAMTOR2Q9Y2Q5 125 aa12.04□□□□□ -0.48
CNKSR1-202ENST00000374253 SNAI2O43623 268 aa12.04□□□□□ -0.48
CNKSR1-202ENST00000374253 ZNF688P0C7X2 276 aa12.04□□□□□ -0.48
CNKSR1-202ENST00000374253 S100A4P26447 101 aaKnown RBP12.04□□□□□ -0.48
CNKSR1-202ENST00000374253 DEFB136Q30KP8 78 aa12.04□□□□□ -0.48
CNKSR1-202ENST00000374253 C18orf65Q6ZTR6 163 aa12.04□□□□□ -0.48
CNKSR1-202ENST00000374253 ITPR2Q14571 2701 aa12.04□□□□□ -0.48
CNKSR1-202ENST00000374253 HBDP02042 147 aa12.03□□□□□ -0.48
CNKSR1-202ENST00000374253 CACNG7P62955 275 aa12.03□□□□□ -0.48
CNKSR1-202ENST00000374253 LINC01545Q5VT33 79 aa12.03□□□□□ -0.48
CNKSR1-202ENST00000374253 DMRTA1Q5VZB9 504 aa12.03□□□□□ -0.48
CNKSR1-202ENST00000374253 Q6YL49 198 aa12.03□□□□□ -0.48
CNKSR1-202ENST00000374253 ZNF702PQ9H963 129 aa12.03□□□□□ -0.48
CNKSR1-202ENST00000374253 IGHV4OR15-8A0A075B7B6 117 aa12.02□□□□□ -0.48
CNKSR1-202ENST00000374253 A0A087WW49 117 aa12.02□□□□□ -0.48
CNKSR1-202ENST00000374253 LEPP41159 167 aa12.02□□□□□ -0.48
CNKSR1-202ENST00000374253 Q6ZVH6 145 aa12.02□□□□□ -0.48
CNKSR1-202ENST00000374253 DCANP1Q8TF63 244 aa12.02□□□□□ -0.48
CNKSR1-202ENST00000374253 MTORP42345 2549 aa12.02□□□□□ -0.49
CNKSR1-202ENST00000374253 TRAV21A0A0B4J279 112 aa12.02□□□□□ -0.49
CNKSR1-202ENST00000374253 HSBP1L1C9JCN9 74 aa12.02□□□□□ -0.49
CNKSR1-202ENST00000374253 HELZ2Q9BYK8 2649 aaKnown RBP12.02□□□□□ -0.49
CNKSR1-202ENST00000374253 MS4A6AQ9H2W1 248 aa12.02□□□□□ -0.49
CNKSR1-202ENST00000374253 PPP1R14DQ9NXH3 145 aa12.02□□□□□ -0.49
CNKSR1-202ENST00000374253 PSMG4Q5JS54 123 aa12.01□□□□□ -0.49
CNKSR1-202ENST00000374253 WNK1Q9H4A3 2382 aa12.01□□□□□ -0.49
CNKSR1-202ENST00000374253 ZNF25P17030 456 aaPredicted RBP12.01□□□□□ -0.49
CNKSR1-202ENST00000374253 SMIM15Q7Z3B0 74 aa12.01□□□□□ -0.49
CNKSR1-202ENST00000374253 DUX3Q96PT4 197 aa12.01□□□□□ -0.49
CNKSR1-202ENST00000374253 FSHBP01225 129 aa12□□□□□ -0.49
CNKSR1-202ENST00000374253 C14orf178Q8N769 122 aaPredicted RBP12□□□□□ -0.49
CNKSR1-202ENST00000374253 OR2K2Q8NGT1 345 aa12□□□□□ -0.49
CNKSR1-202ENST00000374253 LENEPQ9Y5L5 61 aa12□□□□□ -0.49
CNKSR1-202ENST00000374253 NIPBLQ6KC79 2804 aaeCLIP12□□□□□ -0.49
CNKSR1-202ENST00000374253 PPBPP02775 128 aa12□□□□□ -0.49
CNKSR1-202ENST00000374253 IFI27L1Q96BM0 104 aa12□□□□□ -0.49
CNKSR1-202ENST00000374253 ST20Q9HBF5 79 aa12□□□□□ -0.49
CNKSR1-202ENST00000374253 GOLT1BQ9Y3E0 138 aa12□□□□□ -0.49
CNKSR1-202ENST00000374253 PHLDA3Q9Y5J5 127 aa12□□□□□ -0.49
CNKSR1-202ENST00000374253 MUC4Q99102 2169 aa12□□□□□ -0.49
CNKSR1-202ENST00000374253 TRAV12-2A0A075B6T6 113 aa11.99□□□□□ -0.49
CNKSR1-202ENST00000374253 DEFB104AQ8WTQ1 72 aa11.99□□□□□ -0.49
CNKSR1-202ENST00000374253 TRAV12-3A0A0B4J271 114 aa11.99□□□□□ -0.49
CNKSR1-202ENST00000374253 K7EMT4 169 aa11.99□□□□□ -0.49
CNKSR1-202ENST00000374253 HOXD3P31249 432 aaPredicted RBP11.99□□□□□ -0.49
CNKSR1-202ENST00000374253 ASIPP42127 132 aa11.99□□□□□ -0.49
CNKSR1-202ENST00000374253 FAM19A4Q96LR4 140 aa11.99□□□□□ -0.49
CNKSR1-202ENST00000374253 DKK2Q9UBU2 259 aa11.99□□□□□ -0.49
CNKSR1-202ENST00000374253 KRTAP1-3Q8IUG1 177 aa11.98□□□□□ -0.49
CNKSR1-202ENST00000374253 NRACQ8N912 160 aa11.98□□□□□ -0.49
CNKSR1-202ENST00000374253 WFDC11Q8NEX6 87 aa11.98□□□□□ -0.49
CNKSR1-202ENST00000374253 TMEM158Q8WZ71 300 aa11.98□□□□□ -0.49
CNKSR1-202ENST00000374253 ANKRD39Q53RE8 183 aa11.98□□□□□ -0.49
CNKSR1-202ENST00000374253 SCRT2Q9NQ03 307 aa11.98□□□□□ -0.49
CNKSR1-202ENST00000374253 MGPP08493 103 aa11.97□□□□□ -0.49
CNKSR1-202ENST00000374253 ID1P41134 155 aa11.97□□□□□ -0.49
CNKSR1-202ENST00000374253 SLURP1P55000 103 aa11.97□□□□□ -0.49
CNKSR1-202ENST00000374253 KHDC1LQ5JSQ8 128 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms