RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 G3V4G9 280 aa12.11□□□□□ -0.47
SHH-201ENST00000297261 ZNF503Q96F45 646 aa12.11□□□□□ -0.47
SHH-201ENST00000297261 ZNF48Q96MX3 618 aaPredicted RBP12.11□□□□□ -0.47
SHH-201ENST00000297261 PROP1O75360 226 aa12.11□□□□□ -0.47
SHH-201ENST00000297261 PLEKHB2Q96CS7 222 aa12.11□□□□□ -0.47
SHH-201ENST00000297261 VCANP13611 3396 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 LAMA1P25391 3075 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 VMO1Q7Z5L0 202 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 FGF6P10767 208 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 FOXI2Q6ZQN5 318 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 ZNF491Q8N8L2 437 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 SS18L2Q9UHA2 77 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 C22orf46C9J442 243 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 H3BRN7 92 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 P0C879 139 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 OR11H6Q8NGC7 330 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 MRPL36Q9P0J6 103 aaKnown RBP12.1□□□□□ -0.47
SHH-201ENST00000297261 MYO18BQ8IUG5 2567 aa12.1□□□□□ -0.47
SHH-201ENST00000297261 ZNF688P0C7X2 276 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 REV3LO60673 3130 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 SPRY2O43597 315 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 IGLV2-8P01709 118 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 BOD1L2Q8IYS8 172 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 SMIM2Q9BVW6 85 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 CTSZQ9UBR2 303 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 MOB4Q9Y3A3 225 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 MYO9AB2RTY4 2548 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 ADORA2A-AS1P86434 159 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 C9orf139Q6ZV77 190 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 YAE1D1Q9NRH1 226 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 FCN3O75636 299 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 TAL2Q16559 108 aa12.09□□□□□ -0.47
SHH-201ENST00000297261 GP9P14770 177 aa12.08□□□□□ -0.48
SHH-201ENST00000297261 PRO1854Q9UHT4 67 aa12.08□□□□□ -0.48
SHH-201ENST00000297261 CHD8Q9HCK8 2581 aa12.08□□□□□ -0.48
SHH-201ENST00000297261 SLC25A20O43772 301 aa12.08□□□□□ -0.48
SHH-201ENST00000297261 KIAA1549Q9HCM3 1950 aa12.08□□□□□ -0.48
SHH-201ENST00000297261 E7EUB6 86 aa12.07□□□□□ -0.48
SHH-201ENST00000297261 ZNF625Q96I27 306 aaPredicted RBP12.07□□□□□ -0.48
SHH-201ENST00000297261 LINC00477Q96M19 166 aa12.07□□□□□ -0.48
SHH-201ENST00000297261 TRAV26-1A0A087WT03 109 aa12.07□□□□□ -0.48
SHH-201ENST00000297261 LOXL1Q08397 574 aaPredicted RBP12.07□□□□□ -0.48
SHH-201ENST00000297261 LINC00322Q6ZN03 302 aaPredicted RBP12.07□□□□□ -0.48
SHH-201ENST00000297261 C1QTNF4Q9BXJ3 329 aa12.07□□□□□ -0.48
SHH-201ENST00000297261 SPTBN5Q9NRC6 3674 aaKnown RBP12.07□□□□□ -0.48
SHH-201ENST00000297261 A0A087WX48 190 aa12.07□□□□□ -0.48
SHH-201ENST00000297261 NTN5Q8WTR8 489 aaPredicted RBP12.07□□□□□ -0.48
SHH-201ENST00000297261 LINC01587Q99440 93 aa12.07□□□□□ -0.48
SHH-201ENST00000297261 BPESC1Q9GZL8 116 aa12.07□□□□□ -0.48
SHH-201ENST00000297261 ITLN2Q8WWU7 325 aaPredicted RBP12.06□□□□□ -0.48
SHH-201ENST00000297261 TRAV41A0A0B4J266 112 aa12.06□□□□□ -0.48
SHH-201ENST00000297261 EDA2RQ9HAV5 297 aa12.06□□□□□ -0.48
SHH-201ENST00000297261 TIMM21Q9BVV7 248 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 H3BMM0 161 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 IGKV1-17P01599 117 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 UBE2WQ96B02 151 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 HCFC1P51610 2035 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 PMVKQ15126 192 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 C7orf69Q9H7B7 122 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 KAAG1Q9UBP8 84 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 NOTCH2Q04721 2471 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 GAGE12JA6NER3 117 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 PRSS29PA6NIE9 313 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 GAGE7O76087 117 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 GAGE12FP0CL80 117 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 GAGE12GP0CL81 117 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 GAGE12IP0CL82 117 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 GAGE4Q13068 117 aa12.05□□□□□ -0.48
SHH-201ENST00000297261 IFITM1P13164 125 aa12.04□□□□□ -0.48
SHH-201ENST00000297261 LINC00310P59036 64 aa12.04□□□□□ -0.48
SHH-201ENST00000297261 DAZAP2Q15038 168 aaPredicted RBP12.04□□□□□ -0.48
SHH-201ENST00000297261 TMEM101Q96IK0 257 aa12.04□□□□□ -0.48
SHH-201ENST00000297261 GAGE5Q13069 117 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 GAGE6Q13070 117 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 C9orf153Q5TBE3 101 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 DYNAPQ8N1N2 210 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 A0A1B0GXF2 115 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 SDHAF1A6NFY7 115 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 G3V318 75 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 LINC00311Q8N616 119 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 KLHL30-AS1Q8NEE0 82 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 IGFBPL1Q8WX77 278 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 M0R1W7 72 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 UTF1Q5T230 341 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 RITA1Q96K30 269 aa12.03□□□□□ -0.48
SHH-201ENST00000297261 PCSK5Q92824 1860 aa12.02□□□□□ -0.49
SHH-201ENST00000297261 ADARB2-AS1A8MUL3 147 aa12.02□□□□□ -0.49
SHH-201ENST00000297261 SMIM20Q8N5G0 67 aa12.02□□□□□ -0.49
SHH-201ENST00000297261 C8orf86Q6ZUL3 223 aa12.01□□□□□ -0.49
SHH-201ENST00000297261 PTH2Q96A98 100 aa12.01□□□□□ -0.49
SHH-201ENST00000297261 J3QQQ9 107 aa12.01□□□□□ -0.49
SHH-201ENST00000297261 HIST1H4AP62805 103 aaKnown RBP12.01□□□□□ -0.49
SHH-201ENST00000297261 C15orf53Q8NAA6 179 aa12.01□□□□□ -0.49
SHH-201ENST00000297261 CRYBA4P53673 196 aa12.01□□□□□ -0.49
SHH-201ENST00000297261 MORN3Q6PF18 240 aaPredicted RBP12.01□□□□□ -0.49
SHH-201ENST00000297261 AGPAT4-IT1Q9H0P7 198 aa12.01□□□□□ -0.49
SHH-201ENST00000297261 C20orf78Q9BR46 151 aa12.01□□□□□ -0.49
SHH-201ENST00000297261 RHPN1-AS1Q9BWJ2 59 aa12.01□□□□□ -0.49
SHH-201ENST00000297261 C19orf71A6NCJ1 209 aa12□□□□□ -0.49
SHH-201ENST00000297261 LY6G5BQ8NDX9 201 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms