RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ODF3L2Q3SX64 289 aa10.46□□□□□ -0.74
SS18-201ENST00000269137 MRPL54Q6P161 138 aaKnown RBP10.46□□□□□ -0.74
SS18-201ENST00000269137 AMTNQ6UX39 209 aa10.46□□□□□ -0.74
SS18-201ENST00000269137 OR10D4PQ8NGN7 298 aa10.46□□□□□ -0.74
SS18-201ENST00000269137 FAM110AQ9BQ89 295 aa10.46□□□□□ -0.74
SS18-201ENST00000269137 ZNF747Q9BV97 191 aa10.46□□□□□ -0.74
SS18-201ENST00000269137 TMSB15BA0A087X1C1 80 aa10.45□□□□□ -0.74
SS18-201ENST00000269137 A0A1B0GXF2 115 aa10.45□□□□□ -0.74
SS18-201ENST00000269137 KNCNA6PVL3 124 aa10.45□□□□□ -0.74
SS18-201ENST00000269137 INSL3P51460 131 aa10.45□□□□□ -0.74
SS18-201ENST00000269137 BEAN1Q3B7T3 259 aa10.45□□□□□ -0.74
SS18-201ENST00000269137 CLUHP3Q96NS8 147 aa10.45□□□□□ -0.74
SS18-201ENST00000269137 J3KRW8 73 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 MT-ND6P03923 174 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 IGLC6P0CF74 106 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 KIR3DS1Q14943 382 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 PYY3Q5JQD4 70 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 FBN1P35555 2871 aaKnown RBP10.44□□□□□ -0.74
SS18-201ENST00000269137 A0A1B0GUT8 65 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 OR11H12B2RN74 326 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 IGKV3-20P01619 116 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 FABP4P15090 132 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 CDKN1BP46527 198 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 Q6ZQT7 251 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 TMEM136Q6ZRR5 245 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 HIST1H2BLQ99880 126 aa10.44□□□□□ -0.74
SS18-201ENST00000269137 A0A1B0GW15 77 aa10.43□□□□□ -0.74
SS18-201ENST00000269137 C7orf71A4D174 169 aa10.43□□□□□ -0.74
SS18-201ENST00000269137 SNURFLB1AK76 121 aa10.43□□□□□ -0.74
SS18-201ENST00000269137 CTRLP40313 264 aa10.43□□□□□ -0.74
SS18-201ENST00000269137 HBBP68871 147 aa10.43□□□□□ -0.74
SS18-201ENST00000269137 FER1L6-AS1Q8NA97 138 aa10.43□□□□□ -0.74
SS18-201ENST00000269137 WFDC9Q8NEX5 89 aa10.43□□□□□ -0.74
SS18-201ENST00000269137 ZNF324O75467 553 aaPredicted RBP10.42□□□□□ -0.74
SS18-201ENST00000269137 HLA-DQA1P01909 254 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 RIGQ13278 110 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 ZNF124Q15973 351 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 C9orf66Q5T8R8 295 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 LYZL1Q6UWQ5 148 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 STAB1Q9NY15 2570 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 GRIFINA4D1Z8 144 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 F2Z2F3 143 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 ARMS2P0C7Q2 107 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 BORCS7Q96B45 105 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 PACRGQ96M98 296 aaPredicted RBP10.42□□□□□ -0.74
SS18-201ENST00000269137 CNFNQ9BYD5 112 aa10.42□□□□□ -0.74
SS18-201ENST00000269137 MRPL18Q9H0U6 180 aaKnown RBP10.42□□□□□ -0.74
SS18-201ENST00000269137 RBMY1BA6NDE4 496 aaKnown RBP10.41□□□□□ -0.74
SS18-201ENST00000269137 RBMY1EA6NEQ0 496 aaKnown RBP10.41□□□□□ -0.74
SS18-201ENST00000269137 M0R2Z0 102 aa10.41□□□□□ -0.74
SS18-201ENST00000269137 AMBPP02760 352 aa10.41□□□□□ -0.74
SS18-201ENST00000269137 RBMY1DP0C7P1 496 aaKnown RBP10.41□□□□□ -0.74
SS18-201ENST00000269137 SPINK13Q1W4C9 94 aa10.41□□□□□ -0.74
SS18-201ENST00000269137 MCRIP2Q9BUT9 160 aaKnown RBP10.41□□□□□ -0.74
SS18-201ENST00000269137 TPPP3Q9BW30 176 aa10.41□□□□□ -0.74
SS18-201ENST00000269137 GSN-AS1Q9NRJ2 163 aa10.41□□□□□ -0.74
SS18-201ENST00000269137 TRRAPQ9Y4A5 3859 aa10.41□□□□□ -0.74
SS18-201ENST00000269137 TRAV12-3A0A0B4J271 114 aa10.4□□□□□ -0.74
SS18-201ENST00000269137 CAMPP49913 170 aa10.4□□□□□ -0.74
SS18-201ENST00000269137 RAB4BP61018 213 aa10.4□□□□□ -0.74
SS18-201ENST00000269137 ANXA2RQ3ZCQ2 193 aa10.4□□□□□ -0.74
SS18-201ENST00000269137 DNLZQ5SXM8 178 aa10.4□□□□□ -0.74
SS18-201ENST00000269137 GATD1Q8NB37 220 aa10.4□□□□□ -0.74
SS18-201ENST00000269137 SPATA3Q8NHX4 192 aa10.4□□□□□ -0.74
SS18-201ENST00000269137 TMEM158Q8WZ71 300 aa10.4□□□□□ -0.74
SS18-201ENST00000269137 SSBP4Q9BWG4 385 aaPredicted RBP10.4□□□□□ -0.74
SS18-201ENST00000269137 C19orf73Q9NVV2 129 aa10.4□□□□□ -0.74
SS18-201ENST00000269137 COL6A5A8TX70 2615 aa10.4□□□□□ -0.74
SS18-201ENST00000269137 OR5AL1P0C617 328 aa10.4□□□□□ -0.75
SS18-201ENST00000269137 TDRG1Q3Y452 100 aa10.4□□□□□ -0.75
SS18-201ENST00000269137 SHISA2Q6UWI4 295 aa10.4□□□□□ -0.75
SS18-201ENST00000269137 C3orf56Q8N813 242 aa10.4□□□□□ -0.75
SS18-201ENST00000269137 KCNS1Q96KK3 526 aa10.4□□□□□ -0.75
SS18-201ENST00000269137 NAGKQ9UJ70 344 aa10.4□□□□□ -0.75
SS18-201ENST00000269137 TRAV12-2A0A075B6T6 113 aa10.39□□□□□ -0.75
SS18-201ENST00000269137 SNAI2O43623 268 aa10.39□□□□□ -0.75
SS18-201ENST00000269137 CD7P09564 240 aa10.39□□□□□ -0.75
SS18-201ENST00000269137 STHQ8IWL8 128 aa10.39□□□□□ -0.75
SS18-201ENST00000269137 CRXO43186 299 aaPredicted RBP10.38□□□□□ -0.75
SS18-201ENST00000269137 APCSP02743 223 aa10.38□□□□□ -0.75
SS18-201ENST00000269137 MED14OSP0DP75 135 aa10.38□□□□□ -0.75
SS18-201ENST00000269137 MUC21Q5SSG8 566 aa10.38□□□□□ -0.75
SS18-201ENST00000269137 FAM159AQ6UWV7 190 aa10.38□□□□□ -0.75
SS18-201ENST00000269137 C12orf54Q6X4T0 127 aa10.38□□□□□ -0.75
SS18-201ENST00000269137 TRPT1Q86TN4 253 aaKnown RBP10.38□□□□□ -0.75
SS18-201ENST00000269137 SLAQ13239 276 aa10.37□□□□□ -0.75
SS18-201ENST00000269137 CDPF1Q6NVV7 123 aa10.37□□□□□ -0.75
SS18-201ENST00000269137 IGHV4-4A0A075B6R2 117 aa10.37□□□□□ -0.75
SS18-201ENST00000269137 WIPF1O43516 503 aa10.37□□□□□ -0.75
SS18-201ENST00000269137 ASIPP42127 132 aa10.37□□□□□ -0.75
SS18-201ENST00000269137 ZNF493Q6ZR52 646 aa10.37□□□□□ -0.75
SS18-201ENST00000269137 TMEM18Q96B42 140 aa10.37□□□□□ -0.75
SS18-201ENST00000269137 IGHV1OR15-1A0A075B7D0 117 aa10.36□□□□□ -0.75
SS18-201ENST00000269137 GNRH2O43555 120 aa10.36□□□□□ -0.75
SS18-201ENST00000269137 NTF3P20783 257 aa10.36□□□□□ -0.75
SS18-201ENST00000269137 FXYD7P58549 80 aa10.36□□□□□ -0.75
SS18-201ENST00000269137 CACNG7P62955 275 aa10.36□□□□□ -0.75
SS18-201ENST00000269137 C20orf144Q9BQM9 153 aa10.36□□□□□ -0.75
SS18-201ENST00000269137 SCRT2Q9NQ03 307 aa10.36□□□□□ -0.75
SS18-201ENST00000269137 H3BVH4 76 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms