RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 SHISA2Q6UWI4 295 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 LYZL1Q6UWQ5 148 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 FER1L6-AS1Q8NA97 138 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 TMEM158Q8WZ71 300 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 TRAV12-2A0A075B6T6 113 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 TRAV12-3A0A0B4J271 114 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 A0A1B0GUT8 65 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 SNURFLB1AK76 121 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 ARMS2P0C7Q2 107 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 FABP9Q0Z7S8 132 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 C12orf54Q6X4T0 127 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 FRZBQ92765 325 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 MCRIP2Q9BUT9 160 aaKnown RBP16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 NAGKQ9UJ70 344 aa16.88■□□□□ 0.29
SMARCB1-201ENST00000263121 MT-ND6P03923 174 aa16.87■□□□□ 0.29
SMARCB1-201ENST00000263121 HBBP68871 147 aa16.87■□□□□ 0.29
SMARCB1-201ENST00000263121 ANXA2RQ3ZCQ2 193 aa16.87■□□□□ 0.29
SMARCB1-201ENST00000263121 TPPP3Q9BW30 176 aa16.87■□□□□ 0.29
SMARCB1-201ENST00000263121 CRXO43186 299 aaPredicted RBP16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 HLA-DQA1P01909 254 aa16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 MUC21Q5SSG8 566 aa16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 TRPT1Q86TN4 253 aaKnown RBP16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 MRPL18Q9H0U6 180 aaKnown RBP16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 CAMPP49913 170 aa16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 FXYD7P58549 80 aa16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 RIGQ13278 110 aa16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 STHQ8IWL8 128 aa16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 BORCS7Q96B45 105 aa16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 CNFNQ9BYD5 112 aa16.85■□□□□ 0.29
SMARCB1-201ENST00000263121 VWFP04275 2813 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST1H2BKO60814 126 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST1H2BJP06899 126 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 TRGC1P0CF51 173 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST1H2BOP23527 126 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST1H2BBP33778 126 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST1H2BDP58876 126 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 RAB4BP61018 213 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST1H2BCP62807 126 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST2H2BEQ16778 126 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST1H2BHQ93079 126 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST1H2BNQ99877 126 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 HIST1H2BMQ99879 126 aa16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 SSBP4Q9BWG4 385 aaPredicted RBP16.84■□□□□ 0.29
SMARCB1-201ENST00000263121 A0A1B0GW15 77 aa16.83■□□□□ 0.28
SMARCB1-201ENST00000263121 F2Z2F3 143 aa16.83■□□□□ 0.28
SMARCB1-201ENST00000263121 TDRG1Q3Y452 100 aa16.83■□□□□ 0.28
SMARCB1-201ENST00000263121 DNLZQ5SXM8 178 aa16.83■□□□□ 0.28
SMARCB1-201ENST00000263121 FAM159AQ6UWV7 190 aa16.82■□□□□ 0.28
SMARCB1-201ENST00000263121 GATD1Q8NB37 220 aa16.82■□□□□ 0.28
SMARCB1-201ENST00000263121 WFDC10AQ9H1F0 79 aa16.82■□□□□ 0.28
SMARCB1-201ENST00000263121 WIPF1O43516 503 aa16.81■□□□□ 0.28
SMARCB1-201ENST00000263121 SNAI2O43623 268 aa16.81■□□□□ 0.28
SMARCB1-201ENST00000263121 OR5AL1P0C617 328 aa16.81■□□□□ 0.28
SMARCB1-201ENST00000263121 KCNS1Q96KK3 526 aa16.81■□□□□ 0.28
SMARCB1-201ENST00000263121 RBMY1A1P0DJD3 496 aaKnown RBP16.81■□□□□ 0.28
SMARCB1-201ENST00000263121 RBMY1CP0DJD4 496 aa16.81■□□□□ 0.28
SMARCB1-201ENST00000263121 RBMY1FQ15415 496 aaKnown RBP16.81■□□□□ 0.28
SMARCB1-201ENST00000263121 GNRH2O43555 120 aa16.8■□□□□ 0.28
SMARCB1-201ENST00000263121 S100A8P05109 93 aa16.8■□□□□ 0.28
SMARCB1-201ENST00000263121 IGLL1P15814 213 aa16.8■□□□□ 0.28
SMARCB1-201ENST00000263121 ASIPP42127 132 aa16.8■□□□□ 0.28
SMARCB1-201ENST00000263121 MUC21A0A0G2JKD1 596 aa16.79■□□□□ 0.28
SMARCB1-201ENST00000263121 MUC21A0A140T8X8 626 aa16.79■□□□□ 0.28
SMARCB1-201ENST00000263121 H3BVH4 76 aa16.79■□□□□ 0.28
SMARCB1-201ENST00000263121 AMBPP02760 352 aa16.79■□□□□ 0.28
SMARCB1-201ENST00000263121 MED14OSP0DP75 135 aa16.79■□□□□ 0.28
SMARCB1-201ENST00000263121 SLAQ13239 276 aa16.79■□□□□ 0.28
SMARCB1-201ENST00000263121 IGHV1OR15-1A0A075B7D0 117 aa16.78■□□□□ 0.28
SMARCB1-201ENST00000263121 APCSP02743 223 aa16.78■□□□□ 0.28
SMARCB1-201ENST00000263121 NTF3P20783 257 aa16.78■□□□□ 0.28
SMARCB1-201ENST00000263121 ZNF493Q6ZR52 646 aa16.78■□□□□ 0.28
SMARCB1-201ENST00000263121 SCRT2Q9NQ03 307 aa16.78■□□□□ 0.28
SMARCB1-201ENST00000263121 RNASE3P12724 160 aaKnown RBP16.77■□□□□ 0.28
SMARCB1-201ENST00000263121 GTSCR1Q86UQ5 136 aa16.77■□□□□ 0.28
SMARCB1-201ENST00000263121 OR10AG1Q8NH19 301 aa16.77■□□□□ 0.28
SMARCB1-201ENST00000263121 C20orf144Q9BQM9 153 aa16.77■□□□□ 0.28
SMARCB1-201ENST00000263121 IGHV4-4A0A075B6R2 117 aa16.76■□□□□ 0.27
SMARCB1-201ENST00000263121 S100A4P26447 101 aaKnown RBP16.76■□□□□ 0.27
SMARCB1-201ENST00000263121 SSTP61278 116 aa16.76■□□□□ 0.27
SMARCB1-201ENST00000263121 TWIST1Q15672 202 aa16.76■□□□□ 0.27
SMARCB1-201ENST00000263121 INSP01308 110 aa16.75■□□□□ 0.27
SMARCB1-201ENST00000263121 NUTF2P61970 127 aaKnown RBP16.75■□□□□ 0.27
SMARCB1-201ENST00000263121 CACNG7P62955 275 aa16.75■□□□□ 0.27
SMARCB1-201ENST00000263121 TP53TG3Q9ULZ0 132 aa16.75■□□□□ 0.27
SMARCB1-201ENST00000263121 PRR31Q5SQ13 230 aa16.75■□□□□ 0.27
SMARCB1-201ENST00000263121 MSRB1Q9NZV6 116 aa16.75■□□□□ 0.27
SMARCB1-201ENST00000263121 IGHV3-16A0A0C4DH30 117 aa16.74■□□□□ 0.27
SMARCB1-201ENST00000263121 S100A6P06703 90 aa16.74■□□□□ 0.27
SMARCB1-201ENST00000263121 KIAA1644Q3SXP7 199 aa16.74■□□□□ 0.27
SMARCB1-201ENST00000263121 Q8N1Y9 231 aa16.74■□□□□ 0.27
SMARCB1-201ENST00000263121 DEFB125Q8N687 156 aa16.74■□□□□ 0.27
SMARCB1-201ENST00000263121 TRRAPQ9Y4A5 3859 aa16.74■□□□□ 0.27
SMARCB1-201ENST00000263121 LINC00467Q9BRT7 94 aa16.73■□□□□ 0.27
SMARCB1-201ENST00000263121 XCL2Q9UBD3 114 aa16.73■□□□□ 0.27
SMARCB1-201ENST00000263121 TIMM8BQ9Y5J9 83 aaPredicted RBP16.73■□□□□ 0.27
SMARCB1-201ENST00000263121 NDUFA6P56556 154 aa16.72■□□□□ 0.27
SMARCB1-201ENST00000263121 C5orf52A6NGY3 159 aa16.72■□□□□ 0.27
SMARCB1-201ENST00000263121 GIG44P09565 113 aaPredicted RBP16.72■□□□□ 0.27
SMARCB1-201ENST00000263121 SPANXN1Q5VSR9 72 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms