RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 RBAKDNA6NC62 111 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 LRCOL1A6NCL2 159 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 ORM1P02763 201 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 PVALBP20472 110 aaPredicted RBP11.06□□□□□ -0.64
CLN3-255ENST00000637100 TIRAPP58753 221 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 HBG1P69891 147 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 HBG2P69892 147 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 BAXQ07812 192 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 ZNF415Q09FC8 603 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 GCSAMLQ5JQS6 135 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 Q6AWC8 147 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 ZNF479Q96JC4 524 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 SPXQ9BT56 116 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 TMEM70Q9BUB7 260 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 NPCDR1Q9BY65 106 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 LENEPQ9Y5L5 61 aa11.06□□□□□ -0.64
CLN3-255ENST00000637100 TCRBP04435 133 aa11.05□□□□□ -0.64
CLN3-255ENST00000637100 FGF7P21781 194 aa11.05□□□□□ -0.64
CLN3-255ENST00000637100 EVI2AP22794 236 aa11.05□□□□□ -0.64
CLN3-255ENST00000637100 BLNKQ8WV28 456 aa11.05□□□□□ -0.64
CLN3-255ENST00000637100 FXYD5Q96DB9 178 aa11.05□□□□□ -0.64
CLN3-255ENST00000637100 MDFICQ9P1T7 246 aa11.05□□□□□ -0.64
CLN3-255ENST00000637100 UBR4Q5T4S7 5183 aa11.04□□□□□ -0.64
CLN3-255ENST00000637100 SRIP30626 198 aa11.04□□□□□ -0.64
CLN3-255ENST00000637100 RAB32Q13637 225 aa11.04□□□□□ -0.64
CLN3-255ENST00000637100 TDRG1Q3Y452 100 aa11.04□□□□□ -0.64
CLN3-255ENST00000637100 FAM122CQ6P4D5 195 aa11.04□□□□□ -0.64
CLN3-255ENST00000637100 STX12Q86Y82 276 aa11.04□□□□□ -0.64
CLN3-255ENST00000637100 NTN5Q8WTR8 489 aaPredicted RBP11.04□□□□□ -0.64
CLN3-255ENST00000637100 ARPC5LQ9BPX5 153 aa11.04□□□□□ -0.64
CLN3-255ENST00000637100 OR51M1Q9H341 326 aa11.04□□□□□ -0.64
CLN3-255ENST00000637100 TRGV4A0A0C4DH28 118 aa11.03□□□□□ -0.64
CLN3-255ENST00000637100 C5orf51A6NDU8 294 aa11.03□□□□□ -0.64
CLN3-255ENST00000637100 CCDC160A6NGH7 325 aa11.03□□□□□ -0.64
CLN3-255ENST00000637100 LYRM1O43325 122 aa11.03□□□□□ -0.64
CLN3-255ENST00000637100 SMR3BP02814 79 aaPredicted RBP11.03□□□□□ -0.64
CLN3-255ENST00000637100 MIR17HGQ75NE6 70 aa11.03□□□□□ -0.64
CLN3-255ENST00000637100 C10orf126Q8N4M7 172 aa11.03□□□□□ -0.64
CLN3-255ENST00000637100 SEC22CQ9BRL7 303 aa11.03□□□□□ -0.64
CLN3-255ENST00000637100 FAM25EA8MYX2 175 aa11.02□□□□□ -0.65
CLN3-255ENST00000637100 E5RGE8 158 aa11.02□□□□□ -0.65
CLN3-255ENST00000637100 SFTA3P0C7M3 94 aa11.02□□□□□ -0.65
CLN3-255ENST00000637100 GYPEP15421 78 aa11.02□□□□□ -0.65
CLN3-255ENST00000637100 TMED6Q8WW62 240 aa11.02□□□□□ -0.65
CLN3-255ENST00000637100 TXNDC17Q9BRA2 123 aa11.02□□□□□ -0.65
CLN3-255ENST00000637100 TRAV4A0A0B4J268 109 aa11.01□□□□□ -0.65
CLN3-255ENST00000637100 FAM229AH3BQW9 127 aa11.01□□□□□ -0.65
CLN3-255ENST00000637100 SH2D6Q7Z4S9 175 aa11.01□□□□□ -0.65
CLN3-255ENST00000637100 Q8TAT8 98 aa11.01□□□□□ -0.65
CLN3-255ENST00000637100 PHYHIPLQ96FC7 376 aa11.01□□□□□ -0.65
CLN3-255ENST00000637100 GPN1Q9HCN4 374 aaPredicted RBP11.01□□□□□ -0.65
CLN3-255ENST00000637100 IBA57-AS1B1ANH7 110 aa11□□□□□ -0.65
CLN3-255ENST00000637100 C1QBP02746 253 aa11□□□□□ -0.65
CLN3-255ENST00000637100 CRYGDP07320 174 aa11□□□□□ -0.65
CLN3-255ENST00000637100 NHLH2Q02577 135 aa11□□□□□ -0.65
CLN3-255ENST00000637100 LINC01556Q5JQF7 62 aa11□□□□□ -0.65
CLN3-255ENST00000637100 PAXXQ9BUH6 204 aa11□□□□□ -0.65
CLN3-255ENST00000637100 NUDT15Q9NV35 164 aa11□□□□□ -0.65
CLN3-255ENST00000637100 BOLA1Q9Y3E2 137 aa11□□□□□ -0.65
CLN3-255ENST00000637100 TRGV11A0A075B6L2 103 aa10.99□□□□□ -0.65
CLN3-255ENST00000637100 TRAV6A0A075B6T7 132 aa10.99□□□□□ -0.65
CLN3-255ENST00000637100 C9JCJ5 164 aa10.99□□□□□ -0.65
CLN3-255ENST00000637100 MUC21Q5SSG8 566 aa10.99□□□□□ -0.65
CLN3-255ENST00000637100 ARL6IP6Q8N6S5 226 aa10.99□□□□□ -0.65
CLN3-255ENST00000637100 IGHV3-38A0A0C4DH36 116 aa10.98□□□□□ -0.65
CLN3-255ENST00000637100 OR10J4P0C629 311 aa10.98□□□□□ -0.65
CLN3-255ENST00000637100 GATA1P15976 413 aaPredicted RBP10.98□□□□□ -0.65
CLN3-255ENST00000637100 S100A10P60903 97 aa10.98□□□□□ -0.65
CLN3-255ENST00000637100 TMEM183BQ1AE95 376 aa10.98□□□□□ -0.65
CLN3-255ENST00000637100 Q6ZSN1 163 aa10.98□□□□□ -0.65
CLN3-255ENST00000637100 TMEM183AQ8IXX5 376 aa10.98□□□□□ -0.65
CLN3-255ENST00000637100 OR5C1Q8NGR4 320 aa10.98□□□□□ -0.65
CLN3-255ENST00000637100 PCNPQ8WW12 178 aaKnown RBP10.98□□□□□ -0.65
CLN3-255ENST00000637100 WDR61Q9GZS3 305 aaKnown RBP10.98□□□□□ -0.65
CLN3-255ENST00000637100 IGLV5-52A0A0A0MRZ9 124 aa10.97□□□□□ -0.65
CLN3-255ENST00000637100 DIRC3C9JPN6 131 aa10.97□□□□□ -0.65
CLN3-255ENST00000637100 M0R2P5 195 aa10.97□□□□□ -0.65
CLN3-255ENST00000637100 H2AFB2P0C5Z0 115 aa10.97□□□□□ -0.65
CLN3-255ENST00000637100 CSN1S1P47710 185 aa10.97□□□□□ -0.65
CLN3-255ENST00000637100 FAM159AQ6UWV7 190 aa10.97□□□□□ -0.65
CLN3-255ENST00000637100 THAP6Q8TBB0 222 aa10.97□□□□□ -0.65
CLN3-255ENST00000637100 FAM30AQ9NZY2 134 aa10.97□□□□□ -0.65
CLN3-255ENST00000637100 IGHV3-16A0A0C4DH30 117 aa10.96□□□□□ -0.65
CLN3-255ENST00000637100 LOC100131303A0A0U1RQF7 123 aa10.96□□□□□ -0.65
CLN3-255ENST00000637100 RANP62826 216 aaKnown RBP10.96□□□□□ -0.65
CLN3-255ENST00000637100 Q6ZSA8 131 aa10.96□□□□□ -0.65
CLN3-255ENST00000637100 Q8N814 137 aa10.96□□□□□ -0.65
CLN3-255ENST00000637100 KCNIP2Q9NS61 270 aa10.96□□□□□ -0.65
CLN3-255ENST00000637100 H0YIZ8 118 aa10.95□□□□□ -0.66
CLN3-255ENST00000637100 OR4C5Q8NGB2 326 aa10.95□□□□□ -0.66
CLN3-255ENST00000637100 SLC25A31Q9H0C2 315 aa10.95□□□□□ -0.66
CLN3-255ENST00000637100 GNRH2O43555 120 aa10.94□□□□□ -0.66
CLN3-255ENST00000637100 CIDEAO60543 219 aa10.94□□□□□ -0.66
CLN3-255ENST00000637100 KRTAP29-1A8MX34 341 aaPredicted RBP10.93□□□□□ -0.66
CLN3-255ENST00000637100 OR7C2O60412 319 aa10.93□□□□□ -0.66
CLN3-255ENST00000637100 PFN1P07737 140 aaKnown RBP10.93□□□□□ -0.66
CLN3-255ENST00000637100 HAMPP81172 84 aa10.93□□□□□ -0.66
CLN3-255ENST00000637100 TVP23CQ96ET8 276 aa10.93□□□□□ -0.66
CLN3-255ENST00000637100 NMES1Q9C002 83 aa10.93□□□□□ -0.66
CLN3-255ENST00000637100 OR5AC2Q9NZP5 309 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms