RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RGS21Q2M5E4 152 aa11.02□□□□□ -0.65
CLN3-246ENST00000636228 MUC21Q5SSG8 566 aa11.02□□□□□ -0.65
CLN3-246ENST00000636228 IBA57Q5T440 356 aaKnown RBP11.02□□□□□ -0.65
CLN3-246ENST00000636228 LYPD5Q6UWN5 251 aa11.02□□□□□ -0.65
CLN3-246ENST00000636228 ARPC5LQ9BPX5 153 aa11.02□□□□□ -0.65
CLN3-246ENST00000636228 OR51M1Q9H341 326 aa11.02□□□□□ -0.65
CLN3-246ENST00000636228 PRO0255Q9UI72 69 aa11.02□□□□□ -0.65
CLN3-246ENST00000636228 E5RGE8 158 aa11.01□□□□□ -0.65
CLN3-246ENST00000636228 INMT-MINDY4F8WBC2 141 aa11.01□□□□□ -0.65
CLN3-246ENST00000636228 OR5C1Q8NGR4 320 aa11.01□□□□□ -0.65
CLN3-246ENST00000636228 PHYHIPLQ96FC7 376 aa11.01□□□□□ -0.65
CLN3-246ENST00000636228 MDFICQ9P1T7 246 aa11.01□□□□□ -0.65
CLN3-246ENST00000636228 NMBP08949 121 aa11□□□□□ -0.65
CLN3-246ENST00000636228 SFTA3P0C7M3 94 aa11□□□□□ -0.65
CLN3-246ENST00000636228 DNAH10OSP0CZ25 163 aa11□□□□□ -0.65
CLN3-246ENST00000636228 ZNF138P52744 262 aa11□□□□□ -0.65
CLN3-246ENST00000636228 FXYD5Q96DB9 178 aa11□□□□□ -0.65
CLN3-246ENST00000636228 PAXXQ9BUH6 204 aa11□□□□□ -0.65
CLN3-246ENST00000636228 OR5AC2Q9NZP5 309 aa11□□□□□ -0.65
CLN3-246ENST00000636228 RANP62826 216 aaKnown RBP10.99□□□□□ -0.65
CLN3-246ENST00000636228 LRRC37A5PQ49AS3 106 aa10.99□□□□□ -0.65
CLN3-246ENST00000636228 PGPEP1Q9NXJ5 209 aa10.99□□□□□ -0.65
CLN3-246ENST00000636228 FAT1Q14517 4588 aa10.99□□□□□ -0.65
CLN3-246ENST00000636228 HERC1Q15751 4861 aa10.98□□□□□ -0.65
CLN3-246ENST00000636228 TRGV4A0A0C4DH28 118 aa10.98□□□□□ -0.65
CLN3-246ENST00000636228 EPM2AB3EWF7 344 aa10.98□□□□□ -0.65
CLN3-246ENST00000636228 H0YIZ8 118 aa10.98□□□□□ -0.65
CLN3-246ENST00000636228 XGP55808 180 aa10.98□□□□□ -0.65
CLN3-246ENST00000636228 ERVFC1-1P60608 527 aa10.98□□□□□ -0.65
CLN3-246ENST00000636228 ZNF415Q09FC8 603 aa10.98□□□□□ -0.65
CLN3-246ENST00000636228 MRPL23Q16540 153 aaKnown RBP10.98□□□□□ -0.65
CLN3-246ENST00000636228 NEGR1Q7Z3B1 354 aa10.98□□□□□ -0.65
CLN3-246ENST00000636228 ZNF479Q96JC4 524 aa10.98□□□□□ -0.65
CLN3-246ENST00000636228 MRPL32Q9BYC8 188 aaKnown RBP10.98□□□□□ -0.65
CLN3-246ENST00000636228 EREGO14944 169 aa10.97□□□□□ -0.65
CLN3-246ENST00000636228 EIF3GO75821 320 aaKnown RBP eCLIP10.97□□□□□ -0.65
CLN3-246ENST00000636228 SLAQ13239 276 aa10.97□□□□□ -0.65
CLN3-246ENST00000636228 WFDC10BQ8IUB3 73 aa10.97□□□□□ -0.65
CLN3-246ENST00000636228 WDR61Q9GZS3 305 aaKnown RBP10.97□□□□□ -0.65
CLN3-246ENST00000636228 K7EQD1 137 aa10.96□□□□□ -0.65
CLN3-246ENST00000636228 OR7C2O60412 319 aa10.96□□□□□ -0.65
CLN3-246ENST00000636228 KRTAP10-1P60331 282 aa10.96□□□□□ -0.65
CLN3-246ENST00000636228 TMEM183BQ1AE95 376 aa10.96□□□□□ -0.65
CLN3-246ENST00000636228 TMEM183AQ8IXX5 376 aa10.96□□□□□ -0.65
CLN3-246ENST00000636228 SLC25A31Q9H0C2 315 aa10.96□□□□□ -0.65
CLN3-246ENST00000636228 LY96Q9Y6Y9 160 aa10.96□□□□□ -0.65
CLN3-246ENST00000636228 A0A087WTM6 91 aa10.95□□□□□ -0.66
CLN3-246ENST00000636228 GYPEP15421 78 aa10.95□□□□□ -0.66
CLN3-246ENST00000636228 CSN1S1P47710 185 aa10.95□□□□□ -0.66
CLN3-246ENST00000636228 ZNF266Q14584 549 aa10.95□□□□□ -0.66
CLN3-246ENST00000636228 LYPD1Q8N2G4 141 aa10.95□□□□□ -0.66
CLN3-246ENST00000636228 SRIP30626 198 aa10.94□□□□□ -0.66
CLN3-246ENST00000636228 UBE2L3P68036 154 aaKnown RBP10.94□□□□□ -0.66
CLN3-246ENST00000636228 NFE4Q86UQ8 179 aa10.94□□□□□ -0.66
CLN3-246ENST00000636228 HYLS1Q96M11 299 aa10.94□□□□□ -0.66
CLN3-246ENST00000636228 NAGKQ9UJ70 344 aa10.94□□□□□ -0.66
CLN3-246ENST00000636228 TRAV9-2A0A087WT02 112 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 TRBV7-9A0A0J9YWB2 115 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 LOC100131303A0A0U1RQF7 123 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 DIRC3C9JPN6 131 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 GNRH2O43555 120 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 INAFM2P0DMQ5 153 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 FFAR4Q5NUL3 377 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 FAM159AQ6UWV7 190 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 OR10G4Q8NGN3 311 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 RASL10AQ92737 203 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 NMES1Q9C002 83 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 MSRB1Q9NZV6 116 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 RPH3ALQ9UNE2 315 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 ALG5Q9Y673 324 aa10.93□□□□□ -0.66
CLN3-246ENST00000636228 RBAKDNA6NC62 111 aa10.92□□□□□ -0.66
CLN3-246ENST00000636228 C17orf112F2Z3M2 114 aa10.92□□□□□ -0.66
CLN3-246ENST00000636228 IFNA5P01569 189 aa10.92□□□□□ -0.66
CLN3-246ENST00000636228 Q6AWC8 147 aa10.92□□□□□ -0.66
CLN3-246ENST00000636228 CDPF1Q6NVV7 123 aa10.92□□□□□ -0.66
CLN3-246ENST00000636228 IQCF2Q8IXL9 164 aa10.92□□□□□ -0.66
CLN3-246ENST00000636228 PCNPQ8WW12 178 aaKnown RBP10.92□□□□□ -0.66
CLN3-246ENST00000636228 KCNIP2Q9NS61 270 aa10.92□□□□□ -0.66
CLN3-246ENST00000636228 IGHV3-16A0A0C4DH30 117 aa10.91□□□□□ -0.66
CLN3-246ENST00000636228 SMR3BP02814 79 aaPredicted RBP10.91□□□□□ -0.66
CLN3-246ENST00000636228 EVI2AP22794 236 aa10.91□□□□□ -0.66
CLN3-246ENST00000636228 HAMPP81172 84 aa10.91□□□□□ -0.66
CLN3-246ENST00000636228 ATP5SQ99766 215 aa10.91□□□□□ -0.66
CLN3-246ENST00000636228 SPXQ9BT56 116 aa10.91□□□□□ -0.66
CLN3-246ENST00000636228 SMIM3Q9BZL3 60 aa10.91□□□□□ -0.66
CLN3-246ENST00000636228 TRGV11A0A075B6L2 103 aa10.9□□□□□ -0.66
CLN3-246ENST00000636228 PGPA6NDG6 321 aa10.9□□□□□ -0.66
CLN3-246ENST00000636228 Q5VSD8 79 aa10.9□□□□□ -0.66
CLN3-246ENST00000636228 OR4C5Q8NGB2 326 aa10.9□□□□□ -0.66
CLN3-246ENST00000636228 F6UZH7 168 aa10.89□□□□□ -0.67
CLN3-246ENST00000636228 ORM1P02763 201 aa10.89□□□□□ -0.67
CLN3-246ENST00000636228 CRYGDP07320 174 aa10.89□□□□□ -0.67
CLN3-246ENST00000636228 H2BFSP57053 126 aa10.89□□□□□ -0.67
CLN3-246ENST00000636228 PPP1R1CQ8WVI7 109 aa10.89□□□□□ -0.67
CLN3-246ENST00000636228 TRAV4A0A0B4J268 109 aa10.88□□□□□ -0.67
CLN3-246ENST00000636228 C9JCJ5 164 aa10.88□□□□□ -0.67
CLN3-246ENST00000636228 SSNA1O43805 119 aa10.88□□□□□ -0.67
CLN3-246ENST00000636228 KHDC3LQ587J8 217 aa10.88□□□□□ -0.67
CLN3-246ENST00000636228 GOLT1AQ6ZVE7 132 aa10.88□□□□□ -0.67
CLN3-246ENST00000636228 TVP23CQ96ET8 276 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms