RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 H3BUA1 57 aa4.46□□□□□ -1.7
SCN1A-209ENST00000635750 COX7A2LO14548 114 aa4.46□□□□□ -1.7
SCN1A-209ENST00000635750 TBX6O95947 436 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-209ENST00000635750 C2orf66Q6UXQ4 117 aa4.46□□□□□ -1.7
SCN1A-209ENST00000635750 RNF152Q8N8N0 203 aa4.46□□□□□ -1.7
SCN1A-209ENST00000635750 C8orf49Q96NF6 230 aa4.46□□□□□ -1.7
SCN1A-209ENST00000635750 NDUFC2O95298 119 aa4.46□□□□□ -1.7
SCN1A-209ENST00000635750 FAM104BQ5XKR9 115 aa4.46□□□□□ -1.7
SCN1A-209ENST00000635750 ADAMTS9Q9P2N4 1935 aa4.46□□□□□ -1.7
SCN1A-209ENST00000635750 SEM1Q6ZVN7 128 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 RNF183Q96D59 192 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 VSIG2Q96IQ7 327 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 MESP1Q9BRJ9 268 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 MED13Q9UHV7 2174 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 ROS1P08922 2347 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 TRAV3A0A0B4J244 114 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 IGHV7-4-1A0A0J9YVY3 117 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 DEFB113Q30KQ7 82 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 Q5BKY6 102 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 NMSQ5H8A3 153 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 GREM1O60565 184 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 FGFBP3Q8TAT2 258 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 TGFBR3LH3BV60 316 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST1H2BKO60814 126 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST1H2BJP06899 126 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST1H2BOP23527 126 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST1H2BBP33778 126 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST1H2BDP58876 126 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST1H2BCP62807 126 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 DAZ2Q13117 558 aaKnown RBP4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST2H2BEQ16778 126 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-209ENST00000635750 DAZ4Q86SG3 579 aaKnown RBP4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST1H2BHQ93079 126 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST1H2BNQ99877 126 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIST1H2BMQ99879 126 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 NAA38Q9BRA0 125 aaKnown RBP4.45□□□□□ -1.7
SCN1A-209ENST00000635750 DAZ3Q9NR90 486 aaKnown RBP4.45□□□□□ -1.7
SCN1A-209ENST00000635750 U3KQE9 123 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 TNRC6BQ9UPQ9 1833 aaKnown RBP4.45□□□□□ -1.7
SCN1A-209ENST00000635750 H0Y9J4 135 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 UBE2CO00762 179 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 GYPEP15421 78 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 PRO1854Q9UHT4 67 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 NTF4P34130 210 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 GREB1LQ9C091 1923 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-209ENST00000635750 TRAV1-1A0A0B4J248 108 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 LTAP01374 205 aa4.45□□□□□ -1.7
SCN1A-209ENST00000635750 HIGD2BQ4VC39 106 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 PPDPFLQ8WWR9 84 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 IGKV1D-17A0A075B6S4 117 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 IGKV1-9A0A0C4DH69 117 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 ETV2O00321 342 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-209ENST00000635750 ATP5G1P05496 136 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 IGKV4-1P06312 121 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 NREPQ16612 68 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 RNF138Q8WVD3 245 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 HLA-DMBP28068 263 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 C5orf24Q7Z6I8 188 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 OBSL1O75147 1896 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 PLXNB3Q9ULL4 1909 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 FGF16O43320 207 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 IGHV3-30P01768 117 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 IGHV3-33P01772 117 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 IGHV3-30-3P0DP02 117 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 IGHV3-30-5P0DP03 117 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 CARD19Q96LW7 228 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 G3V318 75 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 KIAA1549Q9HCM3 1950 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 TRBV6-6A0A0A6YYG2 114 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 TEX22C9J3V5 150 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 HIST1H2BLQ99880 126 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 THSD7AQ9UPZ6 1657 aa4.44□□□□□ -1.7
SCN1A-209ENST00000635750 MUC4Q99102 2169 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 NCOA6Q14686 2063 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-209ENST00000635750 A0A1B0GW64 132 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 RNF222A6NCQ9 220 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 FAM231BA6NCW3 169 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 F8W1H4 67 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 WISP1O95388 367 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 MPZP25189 248 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 CSRP3P50461 194 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 DSCAMO60469 2012 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 TRBV24-1A0A075B6N3 115 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 NDUFA1O15239 70 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 Q6P435 159 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 ATP6V0E2Q8NHE4 81 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 GFI1Q99684 422 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 SIGLEC8Q9NYZ4 499 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 KIR2DL5BA0A0G2JN68 375 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 KIR2DL5BA0A0G2JPC4 375 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 HGFACQ04756 655 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 TEX36Q5VZQ5 186 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 KIR2DL5AQ8N109 375 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 COX7B2Q8TF08 81 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 ZC2HC1AQ96GY0 325 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 A0A0G2JMZ2 1700 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 LRRC37A2A6NM11 1700 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 ZSWIM8A7E2V4 1837 aa4.43□□□□□ -1.7
SCN1A-209ENST00000635750 ZNF492Q9P255 531 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms