RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 FHITP49789 147 aa10.71□□□□□ -0.69
UPF1-202ENST00000594243 EIF4E3Q8N5X7 224 aaKnown RBP10.71□□□□□ -0.69
UPF1-202ENST00000594243 FAM213BQ8TBF2 198 aa10.71□□□□□ -0.69
UPF1-202ENST00000594243 MBD3L1Q8WWY6 194 aa10.71□□□□□ -0.69
UPF1-202ENST00000594243 PLA2G2EQ9NZK7 142 aa10.71□□□□□ -0.69
UPF1-202ENST00000594243 FBLL1A6NHQ2 334 aaKnown RBP10.7□□□□□ -0.7
UPF1-202ENST00000594243 SNURFLB1AK76 121 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 GGTLC3B5MD39 225 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 RGS13O14921 159 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 IFNA7P01567 189 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 UBE2G2P60604 165 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 PRR9Q5T870 116 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 ZNF680Q8NEM1 530 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 SFT2D1Q8WV19 159 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 LYSTQ99698 3801 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 NDFIP1Q9BT67 221 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 STARD9Q9P2P6 4700 aa10.7□□□□□ -0.7
UPF1-202ENST00000594243 TRAV8-1A0A0A6YYK1 113 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 CBY3A6NI87 242 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 FAM74A7A6NL05 159 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 H2AFB1P0C5Y9 115 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 RAB5CP51148 216 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 ANXA2RQ3ZCQ2 193 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 ZFP69Q49AA0 526 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 Q6AWC8 147 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 SLC51BQ86UW2 128 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 CYB561D1Q8N8Q1 229 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 ATG101Q9BSB4 218 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 TREM1Q9NP99 234 aa10.69□□□□□ -0.7
UPF1-202ENST00000594243 NOP10Q9NPE3 64 aaKnown RBP10.69□□□□□ -0.7
UPF1-202ENST00000594243 IGHV1OR15-1A0A075B7D0 117 aa10.68□□□□□ -0.7
UPF1-202ENST00000594243 DEFB130BP0DP73 79 aa10.68□□□□□ -0.7
UPF1-202ENST00000594243 DEFB130AP0DP74 79 aa10.68□□□□□ -0.7
UPF1-202ENST00000594243 TMEM75Q8N9X5 138 aa10.68□□□□□ -0.7
UPF1-202ENST00000594243 HIST1H2BAQ96A08 127 aa10.68□□□□□ -0.7
UPF1-202ENST00000594243 SGK494Q96LW2 274 aa10.68□□□□□ -0.7
UPF1-202ENST00000594243 PSG8Q9UQ74 426 aa10.68□□□□□ -0.7
UPF1-202ENST00000594243 ARL2-SNX15V9GYD0 113 aa10.68□□□□□ -0.7
UPF1-202ENST00000594243 IGHV4-4A0A075B6R2 117 aa10.67□□□□□ -0.7
UPF1-202ENST00000594243 A0A1B0GVG6 124 aa10.67□□□□□ -0.7
UPF1-202ENST00000594243 F6UZH7 168 aa10.67□□□□□ -0.7
UPF1-202ENST00000594243 PPT1P50897 306 aa10.67□□□□□ -0.7
UPF1-202ENST00000594243 FLI1Q01543 452 aaPredicted RBP10.67□□□□□ -0.7
UPF1-202ENST00000594243 DAZ2Q13117 558 aaKnown RBP10.67□□□□□ -0.7
UPF1-202ENST00000594243 SAPCD1Q5SSQ6 148 aa10.67□□□□□ -0.7
UPF1-202ENST00000594243 IBA57Q5T440 356 aaKnown RBP10.67□□□□□ -0.7
UPF1-202ENST00000594243 FAM159AQ6UWV7 190 aa10.67□□□□□ -0.7
UPF1-202ENST00000594243 FAM210BQ96KR6 192 aa10.67□□□□□ -0.7
UPF1-202ENST00000594243 DNAH1Q9P2D7 4330 aa10.67□□□□□ -0.7
UPF1-202ENST00000594243 TRAV21A0A0B4J279 112 aa10.66□□□□□ -0.7
UPF1-202ENST00000594243 HTN3P15516 51 aa10.66□□□□□ -0.7
UPF1-202ENST00000594243 CST9LP1Q5W188 147 aa10.66□□□□□ -0.7
UPF1-202ENST00000594243 Q6ZQT7 251 aa10.66□□□□□ -0.7
UPF1-202ENST00000594243 PRNTQ86SH4 94 aa10.66□□□□□ -0.7
UPF1-202ENST00000594243 C9orf62Q8N4C0 152 aa10.66□□□□□ -0.7
UPF1-202ENST00000594243 TVP23CQ96ET8 276 aa10.66□□□□□ -0.7
UPF1-202ENST00000594243 TCEAL7Q9BRU2 100 aa10.66□□□□□ -0.7
UPF1-202ENST00000594243 GSN-AS1Q9NRJ2 163 aa10.66□□□□□ -0.7
UPF1-202ENST00000594243 APLNQ9ULZ1 77 aa10.66□□□□□ -0.7
UPF1-202ENST00000594243 TEX46H3BTG2 121 aa10.65□□□□□ -0.7
UPF1-202ENST00000594243 PEX7O00628 323 aa10.65□□□□□ -0.7
UPF1-202ENST00000594243 LY6G6CO95867 125 aa10.65□□□□□ -0.7
UPF1-202ENST00000594243 IGLV2-11P01706 119 aa10.65□□□□□ -0.7
UPF1-202ENST00000594243 ATP5G1P05496 136 aa10.65□□□□□ -0.7
UPF1-202ENST00000594243 ATP5G3P48201 142 aa10.65□□□□□ -0.7
UPF1-202ENST00000594243 SULT1A2P50226 295 aa10.65□□□□□ -0.7
UPF1-202ENST00000594243 C11orf72Q8NBR9 251 aa10.65□□□□□ -0.7
UPF1-202ENST00000594243 LINC00476Q8WZB0 136 aa10.65□□□□□ -0.7
UPF1-202ENST00000594243 NDUFAF3Q9BU61 184 aa10.65□□□□□ -0.7
UPF1-202ENST00000594243 A0A1B0GV50 99 aa10.64□□□□□ -0.71
UPF1-202ENST00000594243 PAGE4O60829 102 aa10.64□□□□□ -0.71
UPF1-202ENST00000594243 MUC21Q5SSG8 566 aa10.64□□□□□ -0.71
UPF1-202ENST00000594243 LGALS9CQ6DKI2 356 aa10.64□□□□□ -0.71
UPF1-202ENST00000594243 LINC00612Q8N6U2 182 aa10.64□□□□□ -0.71
UPF1-202ENST00000594243 LINC00479Q96M42 142 aa10.64□□□□□ -0.71
UPF1-202ENST00000594243 TP53TG3Q9ULZ0 132 aa10.64□□□□□ -0.71
UPF1-202ENST00000594243 TRGV11A0A075B6L2 103 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 TRAV1-1A0A0B4J248 108 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 GAGE12BA1L429 117 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 GAGE7O76087 117 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 GAGE12FP0CL80 117 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 GAGE12GP0CL81 117 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 GAGE12IP0CL82 117 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 TCL1AP56279 114 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 ZNF415Q09FC8 603 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 TDRG1Q3Y452 100 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 SMUG1Q53HV7 270 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 KCNS1Q96KK3 526 aa10.63□□□□□ -0.71
UPF1-202ENST00000594243 TRAV34A0A0B4J273 112 aa10.62□□□□□ -0.71
UPF1-202ENST00000594243 F5H768 121 aa10.62□□□□□ -0.71
UPF1-202ENST00000594243 GCGP01275 180 aa10.62□□□□□ -0.71
UPF1-202ENST00000594243 UBE2G1P62253 170 aa10.62□□□□□ -0.71
UPF1-202ENST00000594243 FMC1Q96HJ9 113 aa10.62□□□□□ -0.71
UPF1-202ENST00000594243 C8orf49Q96NF6 230 aa10.62□□□□□ -0.71
UPF1-202ENST00000594243 NAGKQ9UJ70 344 aa10.62□□□□□ -0.71
UPF1-202ENST00000594243 ZFP30Q9Y2G7 519 aa10.62□□□□□ -0.71
UPF1-202ENST00000594243 KLF12Q9Y4X4 402 aa10.62□□□□□ -0.71
UPF1-202ENST00000594243 SPINK4O60575 86 aa10.61□□□□□ -0.71
UPF1-202ENST00000594243 PFN1P07737 140 aaKnown RBP10.61□□□□□ -0.71
UPF1-202ENST00000594243 LGALS9BQ3B8N2 356 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms