RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 Q6ZSV7 163 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 C5orf24Q7Z6I8 188 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 ESM1Q9NQ30 184 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 U3KQK5 164 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 A6NDX4 124 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 SMIM9A6NGZ8 99 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 SRSF2Q01130 221 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 RPL18AQ02543 176 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 ADAMTSL5Q6ZMM2 481 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 Q6ZNX1 250 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 Q6ZQT7 251 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 DEFB125Q8N687 156 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 MRPL53Q96EL3 112 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 ZC2HC1AQ96GY0 325 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 GSN-AS1Q9NRJ2 163 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 NHP2Q9NX24 153 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 ARID2Q68CP9 1835 aa2.31□□□□□ -2.04
SMCHD1-203ENST00000577880 SCO2A0A1W2PP80 73 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 LRCOL1A6NCL2 159 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 HIGD1CA8MV81 97 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 K7EMT4 169 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 NDUFA3O95167 84 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 HLA-DMBP28068 263 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 ID3Q02535 119 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 SEM1Q6ZVN7 128 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 C5orf56Q8N8D9 126 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 GATD1Q8NB37 220 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 KLHDC3Q9BQ90 382 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 NIT2Q9NQR4 276 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 KLF12Q9Y4X4 402 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 NACAE9PAV3 2078 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 SPTBN4Q9H254 2564 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 ETDCA0A1B0GVM5 59 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 hDV102S1A0JD36 115 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 IZUMO1RA6ND01 250 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 CYSRT1A8MQ03 144 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 FNDC10F2Z333 226 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 OR10D4PQ8NGN7 298 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 SIRPDQ9H106 197 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 LY96Q9Y6Y9 160 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 TLN1Q9Y490 2541 aaKnown RBP2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 USP9XQ93008 2570 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHV7-81A0A0B4J1V7 117 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 F6UB75 175 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 SH2D1AO60880 128 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 IGF1P05019 195 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 Q0VG73 95 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 GAGE2BQ13066 116 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 LAGE3Q14657 143 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 LINC01559Q495D7 138 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 LINC01006Q8NI28 216 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 GTSF1Q8WW33 167 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 TIMM17AQ99595 171 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 SDHCQ99643 169 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 NDUFA4L2Q9NRX3 87 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 CHTOPQ9Y3Y2 248 aaKnown RBP2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 PRR14LQ5THK1 2151 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 SCN8AQ9UQD0 1980 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 A8MXK9 166 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 I3L3M4 83 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 M0R2N4 97 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 LEPROTO15243 131 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 PRB2P02812 416 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 MIFP14174 115 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 PMVKQ15126 192 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 CLPSL2Q6UWE3 100 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 SMR3AQ99954 134 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 RTBDNQ9BSG5 229 aaPredicted RBP2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 PRO0255Q9UI72 69 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 NOTCH4Q99466 2003 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 PIEZO2Q9H5I5 2752 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 NLRC5Q86WI3 1866 aa2.3□□□□□ -2.04
SMCHD1-203ENST00000577880 TRAV8-3A0A0A6YYJ7 113 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 TRAV2A0A0B4J234 112 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 GAGE10A6NGK3 116 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 TMEM238C9JI98 176 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 NXPH4O95158 308 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 NDUFA7O95182 113 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 CXCL3P19876 107 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 ADMP35318 185 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 UBE2D1P51668 147 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 ZNF134P52741 427 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 Q6ZS49 121 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 ZNF114Q8NC26 417 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 KIR2DL5BQ8NHK3 375 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 C5orf30Q96GV9 206 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 OSTCQ9NRP0 149 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 MRPL36Q9P0J6 103 aaKnown RBP2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 HHLA3Q9XRX5 114 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 PLXNA4Q9HCM2 1894 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 TLN2Q9Y4G6 2542 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 GBF1Q92538 1859 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 WDR81Q562E7 1941 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 IGLV2-18A0A075B6J9 118 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHV3-64A0A075B6Q5 118 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 IGHV3-38A0A0C4DH36 116 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 PLA2G10O15496 165 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 MMP23AO75900 390 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 PFN2P35080 140 aa2.29□□□□□ -2.04
SMCHD1-203ENST00000577880 PAX2Q02962 417 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms