RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 AZU1P20160 251 aa9.27□□□□□ -0.93
CLK3-224ENST00000568605 PPT1P50897 306 aa9.27□□□□□ -0.93
CLK3-224ENST00000568605 SUMO1P63165 101 aaKnown RBP9.27□□□□□ -0.93
CLK3-224ENST00000568605 GNG5P63218 68 aa9.27□□□□□ -0.93
CLK3-224ENST00000568605 FAM213BQ8TBF2 198 aa9.27□□□□□ -0.93
CLK3-224ENST00000568605 ATG101Q9BSB4 218 aa9.27□□□□□ -0.93
CLK3-224ENST00000568605 ARL2-SNX15V9GYD0 113 aa9.27□□□□□ -0.93
CLK3-224ENST00000568605 PLAC8L1A1L4L8 177 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 TEX46H3BTG2 121 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 IFNA7P01567 189 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 RAB5CP51148 216 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 UBE2G2P60604 165 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 ANXA2RQ3ZCQ2 193 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 LGALSLQ3ZCW2 172 aaPredicted RBP9.26□□□□□ -0.93
CLK3-224ENST00000568605 PRR9Q5T870 116 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 TMEM75Q8N9X5 138 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 LINC00476Q8WZB0 136 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 FAM210BQ96KR6 192 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 TCEAL7Q9BRU2 100 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 TREM1Q9NP99 234 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 EPDR1Q9UM22 224 aa9.26□□□□□ -0.93
CLK3-224ENST00000568605 IGHV4-4A0A075B6R2 117 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 IGHV1OR15-1A0A075B7D0 117 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 ZNF324O75467 553 aaPredicted RBP9.25□□□□□ -0.93
CLK3-224ENST00000568605 PRM2P04554 102 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 DEFB130BP0DP73 79 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 DEFB130AP0DP74 79 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 HTN3P15516 51 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 ZNF415Q09FC8 603 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 IBA57Q5T440 356 aaKnown RBP9.25□□□□□ -0.93
CLK3-224ENST00000568605 Q6AWC8 147 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 FAM159AQ6UWV7 190 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 SLC51BQ86UW2 128 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 HIST1H2BAQ96A08 127 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 NDUFAF3Q9BU61 184 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 TMPRSS5Q9H3S3 457 aa9.25□□□□□ -0.93
CLK3-224ENST00000568605 NOP10Q9NPE3 64 aaKnown RBP9.25□□□□□ -0.93
CLK3-224ENST00000568605 TRAV8-1A0A0A6YYK1 113 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 TRAV21A0A0B4J279 112 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 FAM74A7A6NL05 159 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 F6UZH7 168 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 LY6G6CO95867 125 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 ATP5G1P05496 136 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 H2AFB1P0C5Y9 115 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 ATP5G3P48201 142 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 FHITP49789 147 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 FLI1Q01543 452 aaPredicted RBP9.24□□□□□ -0.93
CLK3-224ENST00000568605 SFT2D1Q8WV19 159 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 SACSQ9NZJ4 4579 aa9.24□□□□□ -0.93
CLK3-224ENST00000568605 PLECQ15149 4684 aaKnown RBP9.23□□□□□ -0.93
CLK3-224ENST00000568605 MUC4Q99102 2169 aa9.23□□□□□ -0.93
CLK3-224ENST00000568605 TRGV11A0A075B6L2 103 aa9.23□□□□□ -0.93
CLK3-224ENST00000568605 PEX7O00628 323 aa9.23□□□□□ -0.93
CLK3-224ENST00000568605 TCL1AP56279 114 aa9.23□□□□□ -0.93
CLK3-224ENST00000568605 DAZ2Q13117 558 aaKnown RBP9.23□□□□□ -0.93
CLK3-224ENST00000568605 SAPCD1Q5SSQ6 148 aa9.23□□□□□ -0.93
CLK3-224ENST00000568605 CST9LP1Q5W188 147 aa9.23□□□□□ -0.93
CLK3-224ENST00000568605 MBD3L1Q8WWY6 194 aa9.23□□□□□ -0.93
CLK3-224ENST00000568605 NAGKQ9UJ70 344 aa9.23□□□□□ -0.93
CLK3-224ENST00000568605 PSG8Q9UQ74 426 aa9.23□□□□□ -0.93
CLK3-224ENST00000568605 UBE2G1P62253 170 aa9.22□□□□□ -0.93
CLK3-224ENST00000568605 SMUG1Q53HV7 270 aa9.22□□□□□ -0.93
CLK3-224ENST00000568605 MUC21Q5SSG8 566 aa9.22□□□□□ -0.93
CLK3-224ENST00000568605 LGALS9CQ6DKI2 356 aa9.22□□□□□ -0.93
CLK3-224ENST00000568605 PRNTQ86SH4 94 aa9.22□□□□□ -0.93
CLK3-224ENST00000568605 KCNS1Q96KK3 526 aa9.22□□□□□ -0.93
CLK3-224ENST00000568605 LYSTQ99698 3801 aa9.22□□□□□ -0.93
CLK3-224ENST00000568605 APLNQ9ULZ1 77 aa9.22□□□□□ -0.93
CLK3-224ENST00000568605 DNAH1Q9P2D7 4330 aa9.22□□□□□ -0.93
CLK3-224ENST00000568605 A0A1B0GV50 99 aa9.21□□□□□ -0.94
CLK3-224ENST00000568605 Q86TA4 180 aa9.21□□□□□ -0.94
CLK3-224ENST00000568605 C9orf62Q8N4C0 152 aa9.21□□□□□ -0.94
CLK3-224ENST00000568605 LINC00612Q8N6U2 182 aa9.21□□□□□ -0.94
CLK3-224ENST00000568605 C11orf72Q8NBR9 251 aa9.21□□□□□ -0.94
CLK3-224ENST00000568605 FMC1Q96HJ9 113 aa9.21□□□□□ -0.94
CLK3-224ENST00000568605 SGK494Q96LW2 274 aa9.21□□□□□ -0.94
CLK3-224ENST00000568605 MANBALQ9NQG1 85 aa9.21□□□□□ -0.94
CLK3-224ENST00000568605 GSN-AS1Q9NRJ2 163 aa9.21□□□□□ -0.94
CLK3-224ENST00000568605 PLA2G2EQ9NZK7 142 aa9.21□□□□□ -0.94
CLK3-224ENST00000568605 GAGE12BA1L429 117 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 GAGE7O76087 117 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 GCGP01275 180 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 GAGE12FP0CL80 117 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 GAGE12GP0CL81 117 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 GAGE12IP0CL82 117 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 AKR1C3P42330 323 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 SULT1A2P50226 295 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 LGALS9BQ3B8N2 356 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 TDRG1Q3Y452 100 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 C15orf53Q8NAA6 179 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 SDF2L1Q9HCN8 221 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 NACAE9PAV3 2078 aa9.2□□□□□ -0.94
CLK3-224ENST00000568605 TRGV2A0A075B6R0 118 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 TRGV1A0A0A0MS02 117 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 F5H768 121 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 PAGE4O60829 102 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 IFNA1P01562 189 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 IGLV2-11P01706 119 aa9.19□□□□□ -0.94
CLK3-224ENST00000568605 PFN1P07737 140 aaKnown RBP9.19□□□□□ -0.94
CLK3-224ENST00000568605 P0DMU3 169 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms