RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 MED14OSP0DP75 135 aa7.49□□□□□ -1.21
VPS39-208ENST00000564994 IBA57Q5T440 356 aaKnown RBP7.49□□□□□ -1.21
VPS39-208ENST00000564994 LYPD1Q8N2G4 141 aa7.49□□□□□ -1.21
VPS39-208ENST00000564994 C6orf223Q8N319 242 aa7.49□□□□□ -1.21
VPS39-208ENST00000564994 SCGB1C1Q8TD33 95 aa7.49□□□□□ -1.21
VPS39-208ENST00000564994 KRTAP1-5Q9BYS1 174 aa7.49□□□□□ -1.21
VPS39-208ENST00000564994 Q9H8V8 135 aa7.49□□□□□ -1.21
VPS39-208ENST00000564994 TRGV2A0A075B6R0 118 aa7.48□□□□□ -1.21
VPS39-208ENST00000564994 A0A096LPF7 62 aa7.48□□□□□ -1.21
VPS39-208ENST00000564994 TRBV7-9A0A0J9YWB2 115 aa7.48□□□□□ -1.21
VPS39-208ENST00000564994 RBAKDNA6NC62 111 aa7.48□□□□□ -1.21
VPS39-208ENST00000564994 RGS13O14921 159 aa7.48□□□□□ -1.21
VPS39-208ENST00000564994 ZNF266Q14584 549 aa7.48□□□□□ -1.21
VPS39-208ENST00000564994 KHDC3LQ587J8 217 aa7.48□□□□□ -1.21
VPS39-208ENST00000564994 UPK3BQ9BT76 320 aa7.48□□□□□ -1.21
VPS39-208ENST00000564994 MRPL16Q9NX20 251 aaKnown RBP7.48□□□□□ -1.21
VPS39-208ENST00000564994 ALG5Q9Y673 324 aa7.48□□□□□ -1.21
VPS39-208ENST00000564994 DIRC3C9JPN6 131 aa7.47□□□□□ -1.21
VPS39-208ENST00000564994 CSN1S1P47710 185 aa7.47□□□□□ -1.21
VPS39-208ENST00000564994 TAS2R45P59539 299 aa7.47□□□□□ -1.21
VPS39-208ENST00000564994 RAB2AP61019 212 aa7.47□□□□□ -1.21
VPS39-208ENST00000564994 MUC21Q5SSG8 566 aa7.47□□□□□ -1.21
VPS39-208ENST00000564994 MRPS16Q9Y3D3 137 aaKnown RBP7.47□□□□□ -1.21
VPS39-208ENST00000564994 PGPA6NDG6 321 aa7.46□□□□□ -1.22
VPS39-208ENST00000564994 HMGB3O15347 200 aaKnown RBP7.46□□□□□ -1.22
VPS39-208ENST00000564994 IGHV3-53P01767 116 aa7.46□□□□□ -1.22
VPS39-208ENST00000564994 ST6GAL2Q96JF0 529 aa7.46□□□□□ -1.22
VPS39-208ENST00000564994 HYLS1Q96M11 299 aa7.46□□□□□ -1.22
VPS39-208ENST00000564994 ARPC5LQ9BPX5 153 aa7.46□□□□□ -1.22
VPS39-208ENST00000564994 BATF3Q9NR55 127 aa7.46□□□□□ -1.22
VPS39-208ENST00000564994 OTORQ9NRC9 128 aa7.46□□□□□ -1.22
VPS39-208ENST00000564994 MDFICQ9P1T7 246 aa7.46□□□□□ -1.22
VPS39-208ENST00000564994 ZNF415Q09FC8 603 aa7.45□□□□□ -1.22
VPS39-208ENST00000564994 ACOT6Q3I5F7 207 aaPredicted RBP7.45□□□□□ -1.22
VPS39-208ENST00000564994 Q6AWC8 147 aa7.45□□□□□ -1.22
VPS39-208ENST00000564994 TVP23CQ96ET8 276 aa7.45□□□□□ -1.22
VPS39-208ENST00000564994 RPH3ALQ9UNE2 315 aa7.45□□□□□ -1.22
VPS39-208ENST00000564994 LENEPQ9Y5L5 61 aa7.45□□□□□ -1.22
VPS39-208ENST00000564994 A0A1W2PPV4 95 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 PAX4O43316 350 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 CRYBA4P53673 196 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 FHL2Q14192 279 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 TMEM183BQ1AE95 376 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 Q5BKY6 102 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 PQLC2Q6ZP29 291 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 GOLT1AQ6ZVE7 132 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 TMEM183AQ8IXX5 376 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 OR10G4Q8NGN3 311 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 OR10G9Q8NGN4 311 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 OR10G7Q8NGN6 311 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 TMED6Q8WW62 240 aa7.44□□□□□ -1.22
VPS39-208ENST00000564994 TRAV8-1A0A0A6YYK1 113 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 PTTG1O95997 202 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 GNG5P63218 68 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 TTC32Q5I0X7 151 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 HSD17B11Q8NBQ5 300 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 OR2G3Q8NGZ4 309 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 CMTM2Q8TAZ6 248 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 C8orf49Q96NF6 230 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 PRO0255Q9UI72 69 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 HHLA3Q9XRX5 114 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 ICOSQ9Y6W8 199 aa7.43□□□□□ -1.22
VPS39-208ENST00000564994 A0A1W2PPQ1 181 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 F6UZH7 168 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 GNRH2O43555 120 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 SFTA3P0C7M3 94 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 STAG3L2P0CL84 134 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 STAG3L3P0CL85 134 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 ARL14EPLP0DKL9 152 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 ATP6V0CP27449 155 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 CDC34P49427 236 aaPredicted RBP7.42□□□□□ -1.22
VPS39-208ENST00000564994 TDRG1Q3Y452 100 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 FAM74A1Q5RGS3 127 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 FAM159AQ6UWV7 190 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 ARL6IP6Q8N6S5 226 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 RASL10AQ92737 203 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 ZNF479Q96JC4 524 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 AQP10Q96PS8 301 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 MED28Q9H204 178 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 NAGKQ9UJ70 344 aa7.42□□□□□ -1.22
VPS39-208ENST00000564994 TRGV11A0A075B6L2 103 aa7.41□□□□□ -1.22
VPS39-208ENST00000564994 C16orf90A8MZG2 172 aa7.41□□□□□ -1.22
VPS39-208ENST00000564994 LYPD5Q6UWN5 251 aa7.41□□□□□ -1.22
VPS39-208ENST00000564994 SUN5Q8TC36 379 aa7.41□□□□□ -1.22
VPS39-208ENST00000564994 RAB24Q969Q5 203 aa7.41□□□□□ -1.22
VPS39-208ENST00000564994 SGK494Q96LW2 274 aa7.41□□□□□ -1.22
VPS39-208ENST00000564994 PSMG3Q9BT73 122 aaPredicted RBP7.41□□□□□ -1.22
VPS39-208ENST00000564994 SH3BGRL3Q9H299 93 aa7.41□□□□□ -1.22
VPS39-208ENST00000564994 TREM1Q9NP99 234 aa7.41□□□□□ -1.22
VPS39-208ENST00000564994 TRAV21A0A0B4J279 112 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 TRGV4A0A0C4DH28 118 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 IGHV3-16A0A0C4DH30 117 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 SIVA1O15304 175 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 NXPH4O95158 308 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 TYMSP04818 313 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 GCHFRP30047 84 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 LINC00315P59091 139 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 SLAQ13239 276 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 SPATA12Q7Z6I5 190 aa7.4□□□□□ -1.22
VPS39-208ENST00000564994 IQCF2Q8IXL9 164 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms