RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 PAFAH1B2P68402 229 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 CCL20P78556 96 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 GCSAMLQ5JQS6 135 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 OR1N2Q8NGR9 330 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 LINC01006Q8NI28 216 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 FAM167A-AS1Q96KT0 104 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 OVOL2Q9BRP0 275 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 SLC25A2Q9BXI2 301 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 ESM1Q9NQ30 184 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 DAZ1Q9NQZ3 744 aaKnown RBP3.87□□□□□ -1.79
LDLR-209ENST00000558528 OTORQ9NRC9 128 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 CARHSP1Q9Y2V2 147 aaKnown RBP3.87□□□□□ -1.79
LDLR-209ENST00000558528 S4R3C0 116 aa3.87□□□□□ -1.79
LDLR-209ENST00000558528 DOCK11Q5JSL3 2073 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 PGPA6NDG6 321 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 ZNF727A8MUV8 499 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 ATP5LO75964 103 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 IGHV3-11P01762 117 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 MYCNOSP40205 109 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 CMC4P56277 68 aaPredicted RBP3.86□□□□□ -1.79
LDLR-209ENST00000558528 RPL19P84098 196 aaKnown RBP3.86□□□□□ -1.79
LDLR-209ENST00000558528 KIAA0141Q14154 515 aaPredicted RBP3.86□□□□□ -1.79
LDLR-209ENST00000558528 LAGE3Q14657 143 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 TMEM241Q24JQ0 296 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 C10orf91Q5T1B1 145 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 MTURNQ8N3F0 131 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 C5orf17Q8NAS9 161 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 OR9G4Q8NGQ1 327 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 FXYD5Q96DB9 178 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 TVP23CQ96ET8 276 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 SMIM12Q96EX1 92 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 RARRES2Q99969 163 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 TMPRSS5Q9H3S3 457 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 NAT8Q9UHE5 227 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 LY96Q9Y6Y9 160 aa3.86□□□□□ -1.79
LDLR-209ENST00000558528 DNAH1Q9P2D7 4330 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 TRBV19A0A075B6N1 114 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 IGHV4-4A0A075B6R2 117 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 TRAV5A0A0B4J249 113 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 IGHV7-4-1A0A0J9YVY3 117 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 A8MWP6 167 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 PPP5D1E7EU14 171 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 K7EQD1 137 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 PPP1R2P9O14990 202 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 APOC3P02656 99 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 SLC25A5P05141 298 aaKnown RBP3.85□□□□□ -1.79
LDLR-209ENST00000558528 OR10J4P0C629 311 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 IGLC2P0DOY2 106 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 GATA1P15976 413 aaPredicted RBP3.85□□□□□ -1.79
LDLR-209ENST00000558528 AKR1C3P42330 323 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 HNRNPA3P51991 378 aaKnown RBP3.85□□□□□ -1.79
LDLR-209ENST00000558528 UBE2G2P60604 165 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 UBE2G1P62253 170 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 RANP62826 216 aaKnown RBP3.85□□□□□ -1.79
LDLR-209ENST00000558528 DEFA5Q01523 94 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 RHEBQ15382 184 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 VAMP3Q15836 100 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 SPATA31B1PQ5VZV4 182 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 C12orf54Q6X4T0 127 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 SSX7Q7RTT5 188 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 TRPT1Q86TN4 253 aaKnown RBP3.85□□□□□ -1.79
LDLR-209ENST00000558528 NDUFA11Q86Y39 141 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 STPG4Q8N801 248 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 OR11H1Q8NG94 326 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 BLNKQ8WV28 456 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 C11orf52Q96A22 123 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 FMC1Q96HJ9 113 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 BTF3L4Q96K17 158 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 RHPN1-AS1Q9BWJ2 59 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 SCRT1Q9BWW7 348 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 Q9H3A6 140 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 PPDPFQ9H3Y8 114 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 SMPXQ9UHP9 88 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 EPDR1Q9UM22 224 aa3.85□□□□□ -1.79
LDLR-209ENST00000558528 CR1P17927 2039 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 TRAV2A0A0B4J234 112 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 IGHV3-35A0A0C4DH35 117 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 TRBV6-1A0A0K0K1D8 114 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 RBAKDNA6NC62 111 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 C9JCJ5 164 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 PRAC2D3DTV9 90 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 H3BQ15 152 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 M0R036 132 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 DNASE2O00115 360 aaPredicted RBP3.84□□□□□ -1.79
LDLR-209ENST00000558528 MT-ND4LP03901 98 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 PYYP10082 97 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 CEBPGP53567 150 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 SLAQ13239 276 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 SAPCD1Q5SSQ6 148 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 LINC00242Q5T6M2 205 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 CYB561D1Q8N8Q1 229 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 KLHL30-AS1Q8NEE0 82 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 OR2K2Q8NGT1 345 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 ZNF414Q96IQ9 312 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 ZNF479Q96JC4 524 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 FAM218AQ96MZ4 157 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 LINC00052Q96N35 136 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 SMIM7Q9BQ49 75 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 NDFIP1Q9BT67 221 aa3.84□□□□□ -1.79
LDLR-209ENST00000558528 PARLQ9H300 379 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms