RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ERVK11-1P61568 191 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 DEFB125Q8N687 156 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 TMEM133Q9H2Q1 129 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 ZNF256Q9Y2P7 627 aaPredicted RBP4.36□□□□□ -1.71
LIMA1-203ENST00000547825 LY96Q9Y6Y9 160 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 IGHV3OR16-10A0A075B7F0 116 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 TRAV12-3A0A0B4J271 114 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 ZNF815PA8K554 130 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 SRRM5B3KS81 715 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 CEACAM3P40198 252 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 RAB9AP51151 201 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 SUMO2P61956 95 aaKnown RBP4.36□□□□□ -1.71
LIMA1-203ENST00000547825 SLC25A48Q6ZT89 311 aaKnown RBP4.36□□□□□ -1.71
LIMA1-203ENST00000547825 TEX29Q8N6K0 151 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 OR9G4Q8NGQ1 327 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 TMEM158Q8WZ71 300 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 CHAC1Q9BUX1 264 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 OTORQ9NRC9 128 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 IGKV3D-20A0A0C4DH25 116 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 SMIM27A0A1W2PRY6 76 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 LGALS3P17931 250 aaKnown RBP4.36□□□□□ -1.71
LIMA1-203ENST00000547825 RBPJQ06330 500 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 PPP1R27Q86WC6 154 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 Q8N7P7 452 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 SLC25A39Q9BZJ4 359 aaPredicted RBP4.36□□□□□ -1.71
LIMA1-203ENST00000547825 GEMIN7Q9H840 131 aaKnown RBP4.36□□□□□ -1.71
LIMA1-203ENST00000547825 LINC00527Q9UJ94 153 aa4.36□□□□□ -1.71
LIMA1-203ENST00000547825 USP9YO00507 2555 aaPredicted RBP4.36□□□□□ -1.71
LIMA1-203ENST00000547825 A0A0A0MQY5 61 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 IGHV1-18A0A0C4DH31 117 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 GAGE12HA6NDE8 117 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 ATP5LO75964 103 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 COX8AP10176 69 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 BRWD1-AS2P59051 145 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 NPC2P61916 151 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 RHOGP84095 191 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 DIAPH2-AS1Q14236 149 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 RPRMLQ8N4K4 120 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 TMEM75Q8N9X5 138 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 IGFBPL1Q8WX77 278 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 FLNCQ14315 2725 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 MDS2Q8NDY4 140 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 Q8TCH9 128 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 C17orf77Q96MU5 243 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 DOPEY1Q5JWR5 2465 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 ANK3Q12955 4377 aaKnown RBP4.35□□□□□ -1.71
LIMA1-203ENST00000547825 TRAV2A0A0B4J234 112 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 FABP5P3A8MUU1 101 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 KLRB1Q12918 225 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 WFDC2Q14508 124 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 Q6ZS92 163 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 CENPVQ7Z7K6 275 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-203ENST00000547825 C8orf46Q8TAG6 207 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 C8orf49Q96NF6 230 aa4.35□□□□□ -1.71
LIMA1-203ENST00000547825 CELSR2Q9HCU4 2923 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 A0A1W2PPM0 123 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 H3BRM9 83 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 K7EP34 96 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 CNTFRP26992 372 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 ATP5IP56385 69 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-203ENST00000547825 WT1-ASQ06250 92 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 UTF1Q5T230 341 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 SLC25A2Q9BXI2 301 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 C21orf62Q9NYP8 219 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 DSCAMO60469 2012 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 IGKV1OR2-108A0A075B7D4 117 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 A0A1W2PPI3 338 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 SRD5A1P18405 259 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 ATP5G2Q06055 141 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 FAM120AOSQ5T036 256 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 RASL11AQ6T310 242 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-203ENST00000547825 C11orf52Q96A22 123 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 TMEM14BQ9NUH8 114 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 SIGLEC8Q9NYZ4 499 aa4.34□□□□□ -1.71
LIMA1-203ENST00000547825 USP9XQ93008 2570 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-203ENST00000547825 TRAV26-2A0A0B4J265 109 aa4.34□□□□□ -1.72
LIMA1-203ENST00000547825 PSMB11A5LHX3 300 aa4.34□□□□□ -1.72
LIMA1-203ENST00000547825 A8MZ25 164 aa4.34□□□□□ -1.72
LIMA1-203ENST00000547825 SH2D1AO60880 128 aa4.34□□□□□ -1.72
LIMA1-203ENST00000547825 RPS20P60866 119 aaKnown RBP4.34□□□□□ -1.72
LIMA1-203ENST00000547825 GAGE2BQ13066 116 aa4.34□□□□□ -1.72
LIMA1-203ENST00000547825 GAGE2EQ4V326 116 aa4.34□□□□□ -1.72
LIMA1-203ENST00000547825 CLEC19AQ6UXS0 136 aa4.34□□□□□ -1.72
LIMA1-203ENST00000547825 ZNF747Q9BV97 191 aa4.34□□□□□ -1.72
LIMA1-203ENST00000547825 GAGE2DQ9UEU5 116 aa4.34□□□□□ -1.72
LIMA1-203ENST00000547825 LINC00312Q9Y6C7 94 aa4.34□□□□□ -1.72
LIMA1-203ENST00000547825 IGKV3OR2-268A0A0C4DH90 116 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 A8MWV9 139 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 LY6HO94772 140 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 TSPAN13O95857 204 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 IGHV1-46P01743 117 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 COX6CP09669 75 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 GATA1P15976 413 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-203ENST00000547825 EFNA4P52798 201 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 ERCC8Q13216 396 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 Q86TA4 180 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 LINC01549A6NIU2 74 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 H0YJW9 148 aa4.33□□□□□ -1.72
LIMA1-203ENST00000547825 TOMM40O96008 361 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms