RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 OR13A1Q8NGR1 328 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 PRELID3AQ96N28 172 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 FOXC2Q99958 501 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 CNFNQ9BYD5 112 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 MAP1LC3AQ9H492 121 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 NDUFA4L2Q9NRX3 87 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 NHP2Q9NX24 153 aaKnown RBP4.13□□□□□ -1.75
USP28-213ENST00000544967 ESPL1Q14674 2120 aa4.13□□□□□ -1.75
USP28-213ENST00000544967 APCP25054 2843 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 OXTP01178 125 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 PLNP26678 52 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 PATE2Q6UY27 113 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 OR8A1Q8NGG7 326 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 MYOZ3Q8TDC0 251 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 ZC2HC1AQ96GY0 325 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 LINC00479Q96M42 142 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 C20orf78Q9BR46 151 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 MAST4O15021 2626 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 TRAV3A0A0B4J244 114 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 TINCRA0A1B0GVN0 87 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 USP17L23D6RBM5 183 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 K7EMI3 77 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 IGLV2-11P01706 119 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 MT-ATP8P03928 68 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 CECR9P0C854 216 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 COL8A2P25067 703 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 IFI27P40305 119 aaPredicted RBP4.12□□□□□ -1.75
USP28-213ENST00000544967 NMUP48645 174 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 C11orf53Q8IXP5 236 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 CNEP1R1Q8N9A8 125 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 ZFAND3Q9H8U3 227 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 GNG12Q9UBI6 72 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 DCHS2Q6V1P9 2916 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 IGKV1D-37A0A075B6S9 117 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 A0A087WX48 190 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 FABP5P3A8MUU1 101 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 NHLRC4P0CG21 123 aaPredicted RBP4.12□□□□□ -1.75
USP28-213ENST00000544967 COX6B1P14854 86 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 UBE2D1P51668 147 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 TMEM200BQ69YZ2 307 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 SH2D6Q7Z4S9 175 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 MDP1Q86V88 176 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 MDFICQ9P1T7 246 aa4.12□□□□□ -1.75
USP28-213ENST00000544967 ANK3Q12955 4377 aaKnown RBP4.12□□□□□ -1.75
USP28-213ENST00000544967 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.11□□□□□ -1.75
USP28-213ENST00000544967 IGHV3-13P01766 116 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 GLRXP35754 106 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 RPL11P62913 178 aaKnown RBP4.11□□□□□ -1.75
USP28-213ENST00000544967 ATP5G2Q06055 141 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 TET2Q6N021 2002 aaPredicted RBP4.11□□□□□ -1.75
USP28-213ENST00000544967 LINC01549A6NIU2 74 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 SPRY2O43597 315 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 IL4P05112 153 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 VPREB1P12018 145 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 SMCPP49901 116 aaPredicted RBP4.11□□□□□ -1.75
USP28-213ENST00000544967 NDUFV3P56181 108 aaKnown RBP4.11□□□□□ -1.75
USP28-213ENST00000544967 BSPH1Q075Z2 132 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 MORN3Q6PF18 240 aaPredicted RBP4.11□□□□□ -1.75
USP28-213ENST00000544967 TMEM167AQ8TBQ9 72 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 NAA38Q9BRA0 125 aaKnown RBP4.11□□□□□ -1.75
USP28-213ENST00000544967 Q9H3A6 140 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 ADGRG4Q8IZF6 3080 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 USP9YO00507 2555 aaPredicted RBP4.11□□□□□ -1.75
USP28-213ENST00000544967 MYMXA0A1B0GTQ4 84 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 H3BS24 57 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 HOXA3O43365 443 aaPredicted RBP4.11□□□□□ -1.75
USP28-213ENST00000544967 LYZL6O75951 148 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 ARMS2P0C7Q2 107 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 PYYP10082 97 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 MORN5Q5VZ52 161 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 LINC00305Q7Z4B0 112 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 DYSFO75923 2080 aa4.11□□□□□ -1.75
USP28-213ENST00000544967 TRAV5A0A0B4J249 113 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 FAM240AA0A1B0GVK7 77 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 NCBP2LA6PVI3 153 aaKnown RBP4.1□□□□□ -1.75
USP28-213ENST00000544967 E7EQL1 145 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 CSN3P07498 182 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 SLC25A16P16260 332 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 RPL13AP40429 203 aaKnown RBP4.1□□□□□ -1.75
USP28-213ENST00000544967 ZNF137PP52743 207 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 ZNF138P52744 262 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 PDE6HQ13956 83 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 PLGLAQ15195 96 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 MSMPQ1L6U9 139 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 SPRNQ5BIV9 151 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 PRR31Q5SQ13 230 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 APRG1Q8IVJ8 170 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 OR10J6PQ8NGY7 276 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 ZNF469Q96JG9 3925 aaPredicted RBP4.1□□□□□ -1.75
USP28-213ENST00000544967 RTTNQ86VV8 2226 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 OTOGQ6ZRI0 2925 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 A0A1W2PPI3 338 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 A8MWV9 139 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 D6R8Y8 96 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 IFITM1P13164 125 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 ZNF134P52741 427 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 GNG5P63218 68 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 GAGE2BQ13066 116 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 MRPL51Q4U2R6 128 aaKnown RBP4.1□□□□□ -1.75
USP28-213ENST00000544967 GAGE2EQ4V326 116 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 1666.8 ms