RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TMEM78Q5T7P6 136 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 NEGR1Q7Z3B1 354 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 THAP6Q8TBB0 222 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 FRZBQ92765 325 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 FXYD5Q96DB9 178 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 C2orf50Q96LR7 162 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 ARPC5LQ9BPX5 153 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 MRPL32Q9BYC8 188 aaKnown RBP10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 NUDT15Q9NV35 164 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 PTTG2Q9NZH5 202 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 MSRB1Q9NZV6 116 aa10.41□□□□□ -0.74
CLSTN3-213ENST00000541953 CENPXA8MT69 81 aa10.4□□□□□ -0.74
CLSTN3-213ENST00000541953 LYRM1O43325 122 aa10.4□□□□□ -0.74
CLSTN3-213ENST00000541953 TCRBP04435 133 aa10.4□□□□□ -0.74
CLSTN3-213ENST00000541953 NMBP08949 121 aa10.4□□□□□ -0.74
CLSTN3-213ENST00000541953 GYPEP15421 78 aa10.4□□□□□ -0.74
CLSTN3-213ENST00000541953 S100A11P31949 105 aa10.4□□□□□ -0.74
CLSTN3-213ENST00000541953 ZNF415Q09FC8 603 aa10.4□□□□□ -0.74
CLSTN3-213ENST00000541953 NFE4Q86UQ8 179 aa10.4□□□□□ -0.74
CLSTN3-213ENST00000541953 C12orf45Q8N5I9 185 aaPredicted RBP10.4□□□□□ -0.74
CLSTN3-213ENST00000541953 GPN1Q9HCN4 374 aaPredicted RBP10.4□□□□□ -0.74
CLSTN3-213ENST00000541953 TRGV4A0A0C4DH28 118 aa10.39□□□□□ -0.75
CLSTN3-213ENST00000541953 EIF3GO75821 320 aaKnown RBP eCLIP10.39□□□□□ -0.75
CLSTN3-213ENST00000541953 GCSHP23434 173 aa10.39□□□□□ -0.75
CLSTN3-213ENST00000541953 SRIP30626 198 aa10.39□□□□□ -0.75
CLSTN3-213ENST00000541953 ZNF138P52744 262 aa10.39□□□□□ -0.75
CLSTN3-213ENST00000541953 NHLH2Q02577 135 aa10.39□□□□□ -0.75
CLSTN3-213ENST00000541953 AAMDCQ9H7C9 122 aa10.39□□□□□ -0.75
CLSTN3-213ENST00000541953 FAT3Q8TDW7 4589 aa10.39□□□□□ -0.75
CLSTN3-213ENST00000541953 LRCOL1A6NCL2 159 aa10.38□□□□□ -0.75
CLSTN3-213ENST00000541953 IFNA5P01569 189 aa10.38□□□□□ -0.75
CLSTN3-213ENST00000541953 NBEAP1P0C6P0 100 aa10.38□□□□□ -0.75
CLSTN3-213ENST00000541953 TMEM183BQ1AE95 376 aa10.38□□□□□ -0.75
CLSTN3-213ENST00000541953 STX12Q86Y82 276 aa10.38□□□□□ -0.75
CLSTN3-213ENST00000541953 TMEM183AQ8IXX5 376 aa10.38□□□□□ -0.75
CLSTN3-213ENST00000541953 OR10G4Q8NGN3 311 aa10.38□□□□□ -0.75
CLSTN3-213ENST00000541953 CRYGDP07320 174 aa10.37□□□□□ -0.75
CLSTN3-213ENST00000541953 SLAQ13239 276 aa10.37□□□□□ -0.75
CLSTN3-213ENST00000541953 ZNF266Q14584 549 aa10.37□□□□□ -0.75
CLSTN3-213ENST00000541953 OR51M1Q9H341 326 aa10.37□□□□□ -0.75
CLSTN3-213ENST00000541953 FAM30AQ9NZY2 134 aa10.37□□□□□ -0.75
CLSTN3-213ENST00000541953 HMCN2Q8NDA2 5059 aa10.36□□□□□ -0.75
CLSTN3-213ENST00000541953 PVALBP20472 110 aaPredicted RBP10.36□□□□□ -0.75
CLSTN3-213ENST00000541953 HBG1P69891 147 aa10.36□□□□□ -0.75
CLSTN3-213ENST00000541953 HBG2P69892 147 aa10.36□□□□□ -0.75
CLSTN3-213ENST00000541953 IQCF2Q8IXL9 164 aa10.36□□□□□ -0.75
CLSTN3-213ENST00000541953 OR5C1Q8NGR4 320 aa10.36□□□□□ -0.75
CLSTN3-213ENST00000541953 RASL10AQ92737 203 aa10.36□□□□□ -0.75
CLSTN3-213ENST00000541953 PAXXQ9BUH6 204 aa10.36□□□□□ -0.75
CLSTN3-213ENST00000541953 OR5AC2Q9NZP5 309 aa10.36□□□□□ -0.75
CLSTN3-213ENST00000541953 IGHV3-16A0A0C4DH30 117 aa10.35□□□□□ -0.75
CLSTN3-213ENST00000541953 H0YIZ8 118 aa10.35□□□□□ -0.75
CLSTN3-213ENST00000541953 SIX6O95475 246 aa10.35□□□□□ -0.75
CLSTN3-213ENST00000541953 EVI2AP22794 236 aa10.35□□□□□ -0.75
CLSTN3-213ENST00000541953 RANP62826 216 aaKnown RBP10.35□□□□□ -0.75
CLSTN3-213ENST00000541953 ATP6V1FQ16864 119 aa10.35□□□□□ -0.75
CLSTN3-213ENST00000541953 CNPY1Q3B7I2 92 aa10.35□□□□□ -0.75
CLSTN3-213ENST00000541953 Q6AWC8 147 aa10.35□□□□□ -0.75
CLSTN3-213ENST00000541953 TRAV9-2A0A087WT02 112 aa10.34□□□□□ -0.75
CLSTN3-213ENST00000541953 IGLV5-52A0A0A0MRZ9 124 aa10.34□□□□□ -0.75
CLSTN3-213ENST00000541953 GNRH2O43555 120 aa10.34□□□□□ -0.75
CLSTN3-213ENST00000541953 H2AFB2P0C5Z0 115 aa10.34□□□□□ -0.75
CLSTN3-213ENST00000541953 SLC25A31Q9H0C2 315 aa10.34□□□□□ -0.75
CLSTN3-213ENST00000541953 NAGKQ9UJ70 344 aa10.34□□□□□ -0.75
CLSTN3-213ENST00000541953 PKHD1L1Q86WI1 4243 aa10.34□□□□□ -0.75
CLSTN3-213ENST00000541953 TRAV4A0A0B4J268 109 aa10.33□□□□□ -0.76
CLSTN3-213ENST00000541953 TRBV7-9A0A0J9YWB2 115 aa10.33□□□□□ -0.76
CLSTN3-213ENST00000541953 OR7C2O60412 319 aa10.33□□□□□ -0.76
CLSTN3-213ENST00000541953 WFDC2Q14508 124 aa10.33□□□□□ -0.76
CLSTN3-213ENST00000541953 Q6ZSN1 163 aa10.33□□□□□ -0.76
CLSTN3-213ENST00000541953 Q8N3U1 123 aa10.33□□□□□ -0.76
CLSTN3-213ENST00000541953 PCNPQ8WW12 178 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-213ENST00000541953 WDR61Q9GZS3 305 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-213ENST00000541953 DIRC3C9JPN6 131 aa10.32□□□□□ -0.76
CLSTN3-213ENST00000541953 TVP23CQ96ET8 276 aa10.32□□□□□ -0.76
CLSTN3-213ENST00000541953 Q9HAA7 133 aa10.32□□□□□ -0.76
CLSTN3-213ENST00000541953 RBAKDNA6NC62 111 aa10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 C9JCJ5 164 aa10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 F6UZH7 168 aa10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 ORM1P02763 201 aa10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 TYMSP04818 313 aa10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 UBE2L3P68036 154 aaKnown RBP10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 LRRC37A5PQ49AS3 106 aa10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 FAM159AQ6UWV7 190 aa10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 OR4C5Q8NGB2 326 aa10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 SPXQ9BT56 116 aa10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 TMEM70Q9BUB7 260 aa10.31□□□□□ -0.76
CLSTN3-213ENST00000541953 TRGV11A0A075B6L2 103 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 TRAV8-1A0A0A6YYK1 113 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 IGHV3-38A0A0C4DH36 116 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 K7EP13 123 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 GATA1P15976 413 aaPredicted RBP10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 TDRG1Q3Y452 100 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 DPPA3Q6W0C5 159 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 Q8N814 137 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 NHLRC2Q8NBF2 726 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 HYLS1Q96M11 299 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 TXNDC17Q9BRA2 123 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 RPH3ALQ9UNE2 315 aa10.3□□□□□ -0.76
CLSTN3-213ENST00000541953 IBA57-AS1B1ANH7 110 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms