RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PAPPAQ13219 1627 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 IGHV3OR16-10A0A075B7F0 116 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 TRGV1A0A0A0MS02 117 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 CHKB-CPT1BH3BT56 60 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 IGHV1-2P23083 117 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 TFF2Q03403 129 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 RGPD3A6NKT7 1758 aaPredicted RBP6.94□□□□□ -1.3
YBX3-208ENST00000540447 RGPD4Q7Z3J3 1758 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 NYNRINQ9P2P1 1898 aaKnown RBP6.94□□□□□ -1.3
YBX3-208ENST00000540447 IGHV3-53P01767 116 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 CFAP126Q5VTH2 177 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 NDUFA4L2Q9NRX3 87 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 SIGLEC9Q9Y336 463 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 DOCK1Q14185 1865 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 MRPS12O15235 138 aaKnown RBP6.94□□□□□ -1.3
YBX3-208ENST00000540447 DTX1Q86Y01 620 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 ARRDC1-AS1Q9H2J1 176 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 LOC107984640A0A0U1RRK4 108 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 SRRM5B3KS81 715 aa6.94□□□□□ -1.3
YBX3-208ENST00000540447 COL16A1Q07092 1604 aaPredicted RBP6.94□□□□□ -1.3
YBX3-208ENST00000540447 RPL35AP18077 110 aaKnown RBP6.93□□□□□ -1.3
YBX3-208ENST00000540447 PMAIP1Q13794 54 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 NREPQ16612 68 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 IGLV3-32A0A0A0MS00 114 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 B9A039 149 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 E9PLN8 166 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 H3BRN7 92 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 TP53TG3Q9ULZ0 132 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 IGHV1-3A0A0C4DH29 117 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 CSRP1P21291 193 aaKnown RBP6.93□□□□□ -1.3
YBX3-208ENST00000540447 UBE2E1P51965 193 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 UFSP1Q6NVU6 142 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 MBD3L2Q8NHZ7 208 aaPredicted RBP6.93□□□□□ -1.3
YBX3-208ENST00000540447 RNF5Q99942 180 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 SERP1Q9Y6X1 66 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 F5P12259 2224 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 HTN3P15516 51 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 AGPAT4-IT1Q9H0P7 198 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 PRO0628Q9UI54 55 aa6.93□□□□□ -1.3
YBX3-208ENST00000540447 LYRM9A8MSI8 78 aa6.92□□□□□ -1.3
YBX3-208ENST00000540447 COX7B2Q8TF08 81 aa6.92□□□□□ -1.3
YBX3-208ENST00000540447 CASP8AP2Q9UKL3 1982 aa6.92□□□□□ -1.3
YBX3-208ENST00000540447 LECT2O14960 151 aa6.92□□□□□ -1.3
YBX3-208ENST00000540447 ATP5EP2Q5VTU8 51 aa6.92□□□□□ -1.3
YBX3-208ENST00000540447 LTBRP36941 435 aa6.92□□□□□ -1.3
YBX3-208ENST00000540447 DAZ2Q13117 558 aaKnown RBP6.92□□□□□ -1.3
YBX3-208ENST00000540447 DAZ4Q86SG3 579 aaKnown RBP6.92□□□□□ -1.3
YBX3-208ENST00000540447 LINC00526Q96FQ7 95 aa6.92□□□□□ -1.3
YBX3-208ENST00000540447 DAZ1Q9NQZ3 744 aaKnown RBP6.92□□□□□ -1.3
YBX3-208ENST00000540447 DAZ3Q9NR90 486 aaKnown RBP6.92□□□□□ -1.3
YBX3-208ENST00000540447 DOCK6Q96HP0 2047 aa6.92□□□□□ -1.3
YBX3-208ENST00000540447 USP17L23D6RBM5 183 aa6.92□□□□□ -1.3
YBX3-208ENST00000540447 THAP8Q8NA92 274 aa6.92□□□□□ -1.3
YBX3-208ENST00000540447 TRBV7-1A0A0A6YYK4 115 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 C17orf100A8MU93 164 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 C2orf91Q6ZV80 131 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 SND1-IT1Q9HBX3 110 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 QSER1Q2KHR3 1735 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 C11orf86A6NJI1 115 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 TMEM200BQ69YZ2 307 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 RTTNQ86VV8 2226 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 SIPA1L1O43166 1804 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 Q6ZS92 163 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 Q9HAA7 133 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 KIAA2026Q5HYC2 2103 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 IGHV3-38A0A0C4DH36 116 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 DAND5Q8N907 189 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 TOMM6Q96B49 74 aa6.91□□□□□ -1.3
YBX3-208ENST00000540447 ATG2BQ96BY7 2078 aa6.9□□□□□ -1.3
YBX3-208ENST00000540447 ENHOQ6UWT2 76 aa6.9□□□□□ -1.3
YBX3-208ENST00000540447 SNURFQ9Y675 71 aa6.9□□□□□ -1.3
YBX3-208ENST00000540447 ADAMTSL3P82987 1691 aa6.9□□□□□ -1.3
YBX3-208ENST00000540447 A0A0J9YXV3 536 aa6.9□□□□□ -1.3
YBX3-208ENST00000540447 MRPS36P82909 103 aaKnown RBP6.9□□□□□ -1.3
YBX3-208ENST00000540447 SVILO95425 2214 aa6.9□□□□□ -1.3
YBX3-208ENST00000540447 MAP1BP46821 2468 aaKnown RBP6.9□□□□□ -1.31
YBX3-208ENST00000540447 SBF2Q86WG5 1849 aa6.9□□□□□ -1.31
YBX3-208ENST00000540447 NDUFS5O43920 106 aa6.9□□□□□ -1.31
YBX3-208ENST00000540447 PROP1O75360 226 aa6.9□□□□□ -1.31
YBX3-208ENST00000540447 OPRPNQ99935 248 aaPredicted RBP6.9□□□□□ -1.31
YBX3-208ENST00000540447 P0DMU3 169 aa6.9□□□□□ -1.31
YBX3-208ENST00000540447 FAM231AP0DMU4 169 aa6.9□□□□□ -1.31
YBX3-208ENST00000540447 FAM231CP0DMU5 169 aa6.9□□□□□ -1.31
YBX3-208ENST00000540447 IGHV1-8P0DP01 117 aa6.9□□□□□ -1.31
YBX3-208ENST00000540447 HIST2H2BCQ6DN03 193 aa6.9□□□□□ -1.31
YBX3-208ENST00000540447 HIST2H2BDQ6DRA6 164 aa6.9□□□□□ -1.31
YBX3-208ENST00000540447 RPL39LQ96EH5 51 aaKnown RBP6.9□□□□□ -1.31
YBX3-208ENST00000540447 NHSL1Q5SYE7 1610 aa6.9□□□□□ -1.31
YBX3-208ENST00000540447 H3BQ85 93 aa6.89□□□□□ -1.31
YBX3-208ENST00000540447 ZNF318Q5VUA4 2279 aa6.89□□□□□ -1.31
YBX3-208ENST00000540447 IGHV4-28A0A0C4DH34 117 aa6.89□□□□□ -1.31
YBX3-208ENST00000540447 A6NED7 52 aa6.89□□□□□ -1.31
YBX3-208ENST00000540447 ZNF71Q9NQZ8 489 aaPredicted RBP6.89□□□□□ -1.31
YBX3-208ENST00000540447 MSRB1Q9NZV6 116 aa6.89□□□□□ -1.31
YBX3-208ENST00000540447 WI2-2373I1.2A0A1W2PRP0 233 aa6.89□□□□□ -1.31
YBX3-208ENST00000540447 TMEM256-PLSCR3K7ERE1 68 aa6.89□□□□□ -1.31
YBX3-208ENST00000540447 FOXE3Q13461 319 aa6.89□□□□□ -1.31
YBX3-208ENST00000540447 Q8TCH9 128 aa6.89□□□□□ -1.31
YBX3-208ENST00000540447 BLCAPP62952 87 aa6.88□□□□□ -1.31
YBX3-208ENST00000540447 CRIPAKQ8N1N5 446 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms