RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 RNASE1P07998 156 aaKnown RBP15.61■□□□□ 0.09
VPS28-209ENST00000528142 ARMS2P0C7Q2 107 aa15.61■□□□□ 0.09
VPS28-209ENST00000528142 SRIP30626 198 aa15.61■□□□□ 0.09
VPS28-209ENST00000528142 PACRGQ96M98 296 aaPredicted RBP15.61■□□□□ 0.09
VPS28-209ENST00000528142 SCGB2A2Q13296 93 aa15.61■□□□□ 0.09
VPS28-209ENST00000528142 DEFB136Q30KP8 78 aa15.61■□□□□ 0.09
VPS28-209ENST00000528142 LINC01559Q495D7 138 aa15.61■□□□□ 0.09
VPS28-209ENST00000528142 OR10J3Q5JRS4 329 aa15.61■□□□□ 0.09
VPS28-209ENST00000528142 SAMD13Q5VXD3 122 aa15.61■□□□□ 0.09
VPS28-209ENST00000528142 C2orf70A6NJV1 201 aa15.6■□□□□ 0.09
VPS28-209ENST00000528142 F2Z2F3 143 aa15.6■□□□□ 0.09
VPS28-209ENST00000528142 ESDP10768 282 aa15.6■□□□□ 0.09
VPS28-209ENST00000528142 DEFB1P60022 68 aa15.6■□□□□ 0.09
VPS28-209ENST00000528142 RIGQ13278 110 aa15.6■□□□□ 0.09
VPS28-209ENST00000528142 GATD1Q8NB37 220 aa15.6■□□□□ 0.09
VPS28-209ENST00000528142 OR10J6PQ8NGY7 276 aa15.6■□□□□ 0.09
VPS28-209ENST00000528142 SLURP1P55000 103 aa15.59■□□□□ 0.09
VPS28-209ENST00000528142 HIST1H1AQ02539 215 aaPredicted RBP15.59■□□□□ 0.09
VPS28-209ENST00000528142 LYZL1Q6UWQ5 148 aa15.59■□□□□ 0.09
VPS28-209ENST00000528142 OR8A1Q8NGG7 326 aa15.59■□□□□ 0.09
VPS28-209ENST00000528142 MS4A6AQ9H2W1 248 aa15.59■□□□□ 0.09
VPS28-209ENST00000528142 LINC01619G3V211 115 aa15.59■□□□□ 0.09
VPS28-209ENST00000528142 SERF1AO75920 110 aa15.59■□□□□ 0.09
VPS28-209ENST00000528142 IGLC6P0CF74 106 aa15.59■□□□□ 0.09
VPS28-209ENST00000528142 ID1P41134 155 aa15.59■□□□□ 0.09
VPS28-209ENST00000528142 PYY3Q5JQD4 70 aa15.59■□□□□ 0.09
VPS28-209ENST00000528142 ADAMTSL5Q6ZMM2 481 aa15.59■□□□□ 0.09
VPS28-209ENST00000528142 A0A1B0GW15 77 aa15.58■□□□□ 0.08
VPS28-209ENST00000528142 ORM1P02763 201 aa15.58■□□□□ 0.08
VPS28-209ENST00000528142 PRR31Q5SQ13 230 aa15.58■□□□□ 0.08
VPS28-209ENST00000528142 BAGE3Q86Y29 109 aa15.58■□□□□ 0.08
VPS28-209ENST00000528142 OR11H1Q8NG94 326 aa15.58■□□□□ 0.08
VPS28-209ENST00000528142 FAM19A4Q96LR4 140 aa15.58■□□□□ 0.08
VPS28-209ENST00000528142 ALKBH7Q9BT30 221 aaPredicted RBP15.58■□□□□ 0.08
VPS28-209ENST00000528142 TPPP3Q9BW30 176 aa15.58■□□□□ 0.08
VPS28-209ENST00000528142 C11orf21Q9P2W6 132 aa15.58■□□□□ 0.08
VPS28-209ENST00000528142 HIVEP2P31629 2446 aa15.58■□□□□ 0.08
VPS28-209ENST00000528142 F6UB75 175 aa15.57■□□□□ 0.08
VPS28-209ENST00000528142 ZFAND2AQ8N6M9 145 aa15.57■□□□□ 0.08
VPS28-209ENST00000528142 OR1N2Q8NGR9 330 aa15.57■□□□□ 0.08
VPS28-209ENST00000528142 WFDC12Q8WWY7 111 aa15.57■□□□□ 0.08
VPS28-209ENST00000528142 TMEM18Q96B42 140 aa15.57■□□□□ 0.08
VPS28-209ENST00000528142 C16orf95Q9H693 158 aa15.57■□□□□ 0.08
VPS28-209ENST00000528142 IGKV3D-20A0A0C4DH25 116 aa15.57■□□□□ 0.08
VPS28-209ENST00000528142 CTRLP40313 264 aa15.57■□□□□ 0.08
VPS28-209ENST00000528142 PRR9Q5T870 116 aa15.57■□□□□ 0.08
VPS28-209ENST00000528142 WFDC3Q8IUB2 231 aa15.57■□□□□ 0.08
VPS28-209ENST00000528142 K7EQG2 157 aa15.56■□□□□ 0.08
VPS28-209ENST00000528142 HILS1P60008 231 aa15.56■□□□□ 0.08
VPS28-209ENST00000528142 FER1L6-AS1Q8NA97 138 aa15.56■□□□□ 0.08
VPS28-209ENST00000528142 C18orf32Q8TCD1 76 aa15.56■□□□□ 0.08
VPS28-209ENST00000528142 BORCS7Q96B45 105 aa15.56■□□□□ 0.08
VPS28-209ENST00000528142 KHDC1LQ5JSQ8 128 aa15.55■□□□□ 0.08
VPS28-209ENST00000528142 KLHL30-AS1Q8NEE0 82 aa15.55■□□□□ 0.08
VPS28-209ENST00000528142 ZNF418Q8TF45 676 aaPredicted RBP15.55■□□□□ 0.08
VPS28-209ENST00000528142 TRBV7-9A0A0J9YWB2 115 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 FOSL1P15407 271 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 HIST2H2BDQ6DRA6 164 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 Q6ZQT7 251 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 LINC01006Q8NI28 216 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 DPF1Q92782 380 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 DUX3Q96PT4 197 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 NF1P21359 2839 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 NSD1Q96L73 2696 aaPredicted RBP15.54■□□□□ 0.08
VPS28-209ENST00000528142 LOC102724200A0A096LPH7 203 aaPredicted RBP15.54■□□□□ 0.08
VPS28-209ENST00000528142 INAFM1C9JVW0 142 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 ZNF493Q6ZR52 646 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 APRG1Q8IVJ8 170 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 RCHY1Q96PM5 261 aa15.54■□□□□ 0.08
VPS28-209ENST00000528142 M0QZ24 198 aa15.53■□□□□ 0.08
VPS28-209ENST00000528142 TFPI2P48307 235 aa15.53■□□□□ 0.08
VPS28-209ENST00000528142 FN1P02751 2386 aaKnown RBP15.53■□□□□ 0.08
VPS28-209ENST00000528142 IQCJQ1A5X6 159 aa15.52■□□□□ 0.08
VPS28-209ENST00000528142 OR9G4Q8NGQ1 327 aa15.52■□□□□ 0.08
VPS28-209ENST00000528142 CNFNQ9BYD5 112 aa15.52■□□□□ 0.08
VPS28-209ENST00000528142 PAFAH1B2P68402 229 aa15.52■□□□□ 0.07
VPS28-209ENST00000528142 DLX4Q92988 240 aaPredicted RBP15.52■□□□□ 0.07
VPS28-209ENST00000528142 ZNF688P0C7X2 276 aa15.51■□□□□ 0.07
VPS28-209ENST00000528142 CD28P10747 220 aa15.51■□□□□ 0.07
VPS28-209ENST00000528142 NIT2Q9NQR4 276 aa15.51■□□□□ 0.07
VPS28-209ENST00000528142 PEMTQ9UBM1 199 aa15.51■□□□□ 0.07
VPS28-209ENST00000528142 MUC21A0A0G2JKD1 596 aa15.5■□□□□ 0.07
VPS28-209ENST00000528142 MUC21A0A140T8X8 626 aa15.5■□□□□ 0.07
VPS28-209ENST00000528142 SNRPD3P62318 126 aaKnown RBP15.5■□□□□ 0.07
VPS28-209ENST00000528142 PSMG4Q5JS54 123 aa15.5■□□□□ 0.07
VPS28-209ENST00000528142 MUC21Q5SSG8 566 aa15.5■□□□□ 0.07
VPS28-209ENST00000528142 CSN3P07498 182 aa15.5■□□□□ 0.07
VPS28-209ENST00000528142 JOSD1Q15040 202 aaPredicted RBP15.5■□□□□ 0.07
VPS28-209ENST00000528142 KCNS1Q96KK3 526 aa15.5■□□□□ 0.07
VPS28-209ENST00000528142 F8P00451 2351 aa15.49■□□□□ 0.07
VPS28-209ENST00000528142 NTF3P20783 257 aa15.49■□□□□ 0.07
VPS28-209ENST00000528142 RAX2Q96IS3 184 aa15.49■□□□□ 0.07
VPS28-209ENST00000528142 TRAV21A0A0B4J279 112 aa15.48■□□□□ 0.07
VPS28-209ENST00000528142 J3KRW8 73 aa15.48■□□□□ 0.07
VPS28-209ENST00000528142 GPX1P07203 203 aa15.48■□□□□ 0.07
VPS28-209ENST00000528142 SSTP61278 116 aa15.48■□□□□ 0.07
VPS28-209ENST00000528142 CDPF1Q6NVV7 123 aa15.48■□□□□ 0.07
VPS28-209ENST00000528142 C11orf44Q8N8P7 122 aa15.48■□□□□ 0.07
VPS28-209ENST00000528142 KLLNB2CW77 178 aa15.47■□□□□ 0.07
VPS28-209ENST00000528142 FHL3Q13643 280 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms