RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ATMQ13315 3056 aa0.56□□□□□ -2.32
CD44-215ENST00000525241 KIF13AQ9H1H9 1805 aa0.56□□□□□ -2.32
CD44-215ENST00000525241 ERBINQ96RT1 1412 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 KIAA1107Q9UPP5 1409 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 NBASA2RRP1 2371 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 MGAQ8IWI9 3026 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 VPS13CQ709C8 3753 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 TRAV10A0A0B4J240 114 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 CCDC160A6NGH7 325 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 C17orf112F2Z3M2 114 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 PGRMC1O00264 195 aaKnown RBP0.55□□□□□ -2.32
CD44-215ENST00000525241 CCL25O15444 150 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 IFNA14P01570 189 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 APOA2P02652 100 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 TMBIM6P55061 237 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 HBBP68871 147 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 TFAMQ00059 246 aaKnown RBP0.55□□□□□ -2.32
CD44-215ENST00000525241 MYL5Q02045 173 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 RTL8BQ17RB0 113 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 MPV17LQ2QL34 196 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 GDF5OSQ5U4N7 250 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 EIF5AL1Q6IS14 154 aaKnown RBP0.55□□□□□ -2.32
CD44-215ENST00000525241 OR5D14Q8NGL3 314 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 OR2T35Q8NGX2 323 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 TMEM254Q8TBM7 123 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 C4orf3Q8WVX3 66 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 DIRC1Q969H9 104 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 HYLS1Q96M11 299 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 TP53RKQ96S44 253 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 TMEM70Q9BUB7 260 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 CACYBPQ9HB71 228 aaKnown RBP0.55□□□□□ -2.32
CD44-215ENST00000525241 CDC42SE1Q9NRR8 79 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 NUBP2Q9Y5Y2 271 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 LY96Q9Y6Y9 160 aa0.55□□□□□ -2.32
CD44-215ENST00000525241 SRRM2Q9UQ35 2752 aaKnown RBP0.55□□□□□ -2.32
CD44-215ENST00000525241 PLXNA2O75051 1894 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 ATG2AQ2TAZ0 1938 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 LAMA5O15230 3695 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 IGHV1-58A0A0C4DH39 117 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 PRORSD1PA6NEY8 169 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 NUPR1O60356 82 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 HIST1H2BKO60814 126 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 HIST1H2BJP06899 126 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 OR10J4P0C629 311 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 RAB5CP51148 216 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 KLRD1Q13241 179 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 DCUN1D2Q6PH85 259 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 TEX261Q6UWH6 196 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 C4orf22Q6V702 233 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 ARPINQ7Z6K5 226 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 OR5AS1Q8N127 324 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 THEM6Q8WUY1 208 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 CHCHD1Q96BP2 118 aaKnown RBP0.54□□□□□ -2.32
CD44-215ENST00000525241 MUCL1Q96DR8 90 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 RMND5BQ96G75 393 aaPredicted RBP0.54□□□□□ -2.32
CD44-215ENST00000525241 GGACTQ9BVM4 153 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 C6orf62Q9GZU0 229 aaPredicted RBP0.54□□□□□ -2.32
CD44-215ENST00000525241 U3KQ87 197 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 KIDINS220Q9ULH0 1771 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 CUBNO60494 3623 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 CSPG4Q6UVK1 2322 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 FAM135BQ49AJ0 1406 aa0.54□□□□□ -2.32
CD44-215ENST00000525241 CDK12Q9NYV4 1490 aaPredicted RBP0.54□□□□□ -2.32
CD44-215ENST00000525241 TRIOO75962 3097 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 LAMA1P25391 3075 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 TOP2BQ02880 1626 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 TRAV27A0A087WT01 109 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 RER1O15258 196 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 NBEAP1P0C6P0 100 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 CXCL8P10145 99 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 ZNF25P17030 456 aaPredicted RBP0.53□□□□□ -2.32
CD44-215ENST00000525241 RPS3P23396 243 aaKnown RBP eCLIP0.53□□□□□ -2.32
CD44-215ENST00000525241 RPL35P42766 123 aaKnown RBP0.53□□□□□ -2.32
CD44-215ENST00000525241 POLR2HP52434 150 aaKnown RBP0.53□□□□□ -2.32
CD44-215ENST00000525241 CDK6Q00534 326 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 TOMM20LQ6UXN7 152 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 STX12Q86Y82 276 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 LINC00269Q8N2A0 174 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 FAM24BQ8N5W8 94 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 Q8N6K4 173 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 RAB37Q96AX2 223 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 BORCS8Q96FH0 119 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 TAS2R7Q9NYW3 318 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 ATPIF1Q9UII2 106 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 NDUFAF1Q9Y375 327 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 BCL9O00512 1426 aa0.53□□□□□ -2.32
CD44-215ENST00000525241 APC2O95996 2303 aa0.53□□□□□ -2.33
CD44-215ENST00000525241 ABCA4P78363 2273 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 TRBV7-6A0A0J9YX20 115 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 A0A1B0GV72 72 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 hDV103S1A0JD37 113 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 C9orf170A2RU37 121 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 C5orf67F2Z3F1 127 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 GABARAPH6UMI1 98 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 M0R233 179 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 ERC2-IT1O76042 136 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 CST7O76096 145 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 RPL7P18124 248 aaKnown RBP0.52□□□□□ -2.33
CD44-215ENST00000525241 HRCT1Q6UXD1 115 aa0.52□□□□□ -2.33
CD44-215ENST00000525241 LINC00322Q6ZN03 302 aaPredicted RBP0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms