RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TRGV9Q99603 122 aa2.48□□□□□ -2.01
NUP54-212ENST00000513248 RSG1Q9BU20 258 aa2.48□□□□□ -2.01
NUP54-212ENST00000513248 C20orf85Q9H1P6 137 aa2.48□□□□□ -2.01
NUP54-212ENST00000513248 RPRMQ9NS64 109 aa2.48□□□□□ -2.01
NUP54-212ENST00000513248 XCL2Q9UBD3 114 aa2.48□□□□□ -2.01
NUP54-212ENST00000513248 PRO0461Q9UI25 63 aa2.48□□□□□ -2.01
NUP54-212ENST00000513248 TBC1D24Q9ULP9 559 aa2.48□□□□□ -2.01
NUP54-212ENST00000513248 GOLT1BQ9Y3E0 138 aa2.48□□□□□ -2.01
NUP54-212ENST00000513248 SACSQ9NZJ4 4579 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 FAM240BA0A1B0GVZ2 78 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 IGLL5B9A064 214 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 PANO1I0J062 215 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 LYRM1O43325 122 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 COX7A2P2O60397 106 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 HYPMO75409 117 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 RLN2P04090 185 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 METTL15P1P0C7V9 234 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 LINC00869P0C866 280 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 MIFP14174 115 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 HTN3P15516 51 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 RPL7P18124 248 aaKnown RBP2.47□□□□□ -2.01
NUP54-212ENST00000513248 PSMB3P49720 205 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 LINC01620Q4KN68 170 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 C1orf194Q5T5A4 169 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 ACOT7LQ6ZUV0 252 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 Q6ZVH6 145 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 C12orf45Q8N5I9 185 aaPredicted RBP2.47□□□□□ -2.01
NUP54-212ENST00000513248 ZNF738Q8NE65 137 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 DCANP1Q8TF63 244 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 S100ZQ8WXG8 99 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 GPR82Q96P67 336 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 ARL6Q9H0F7 186 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 NPVFQ9HCQ7 196 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 HIGD1AQ9Y241 93 aa2.47□□□□□ -2.01
NUP54-212ENST00000513248 RCL1Q9Y2P8 373 aaKnown RBP2.47□□□□□ -2.01
NUP54-212ENST00000513248 TRAV10A0A0B4J240 114 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 TMEM189A5PLL7 270 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 ZNF98A6NK75 572 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 C11orf94C9JXX5 98 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 H0Y9J4 135 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 H3BMM0 161 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 ISLRO14498 428 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 PITX3O75364 302 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 HBE1P02100 147 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 TCRBP04435 133 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 SPART-AS1P0CW21 52 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 HLA-DRB4P13762 266 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 HTN1P15515 57 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 HLA-DMBP28068 263 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 TAS2R30P59541 319 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 DEFA1P59665 94 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 DEFA3P59666 94 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 SELENOTP62341 195 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 RPL32P62910 135 aaKnown RBP2.46□□□□□ -2.02
NUP54-212ENST00000513248 PSG9Q00887 426 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 EWSR1Q01844 656 aaKnown RBP eCLIP2.46□□□□□ -2.02
NUP54-212ENST00000513248 HIST1H1AQ02539 215 aaPredicted RBP2.46□□□□□ -2.02
NUP54-212ENST00000513248 BAXQ07812 192 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 SLC38A11Q08AI6 406 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 RRN3P1Q2M238 152 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 FAM78BQ5VT40 261 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 SPATA31B1PQ5VZV4 182 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 FOXI2Q6ZQN5 318 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 ZNF767PQ75MW2 155 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 TMEM144Q7Z5S9 345 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 ZNF546Q86UE3 836 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 STX12Q86Y82 276 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 UBE2DNLQ8IWF7 75 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 ZNF709Q8N972 641 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 OR4D5Q8NGN0 318 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 ZNF431Q8TF32 576 aaPredicted RBP2.46□□□□□ -2.02
NUP54-212ENST00000513248 MITD1Q8WV92 249 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 SMIM8Q96KF7 97 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 LINC00167Q96N53 147 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 SEC22CQ9BRL7 303 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 CCDC32Q9BV29 185 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 SCRT1Q9BWW7 348 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 SLC25A39Q9BZJ4 359 aaPredicted RBP2.46□□□□□ -2.02
NUP54-212ENST00000513248 Q9H3A6 140 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 C11orf68Q9H3H3 251 aaKnown RBP2.46□□□□□ -2.02
NUP54-212ENST00000513248 SAV1Q9H4B6 383 aaPredicted RBP2.46□□□□□ -2.02
NUP54-212ENST00000513248 NUDT15Q9NV35 164 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 RFNGQ9Y644 331 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 HLA-DRB4X5D2U9 266 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 DNAH1Q9P2D7 4330 aa2.46□□□□□ -2.02
NUP54-212ENST00000513248 IGKV1D-37A0A075B6S9 117 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 DEFB131BA0A096LNP1 70 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 UBE2L5PA0A1B0GUS4 154 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 FAM24AA6NFZ4 105 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 SMIM9A6NGZ8 99 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 F6UB75 175 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 F8WDY8 70 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 H3BRN7 92 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 AGPAT2O15120 278 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 SSNA1O43805 119 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 CCNKO75909 580 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 CST7O76096 145 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 INSP01308 110 aa2.45□□□□□ -2.02
NUP54-212ENST00000513248 ZNF705DP0CH99 300 aaPredicted RBP2.45□□□□□ -2.02
NUP54-212ENST00000513248 ZNF705BP0CI00 300 aaPredicted RBP2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms