RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 GLMPQ8WWB7 406 aa6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 ZNF48Q96MX3 618 aaPredicted RBP6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 UPK2O00526 184 aa6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 HBBP68871 147 aa6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 SHISA2Q6UWI4 295 aa6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 CENPVQ7Z7K6 275 aaPredicted RBP6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 SRSF12Q8WXF0 261 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 HSPE1P61604 102 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 ERHP84090 104 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 Q6ZS46 218 aa6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 GTSCR1Q86UQ5 136 aa6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 PRNDQ9UKY0 176 aa6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 UFC1Q9Y3C8 167 aa6.82□□□□□ -1.32
LIMCH1-209ENST00000509277 A0A1W2PPM0 123 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 EIF4EBP1Q13541 118 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 C5orf64Q2M2E5 130 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 MORN5Q5VZ52 161 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 TMEM160Q9NX00 188 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 C15orf61A6NNL5 157 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 LY6LH3BQJ8 138 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 APOMO95445 188 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 SCGB1C2P0DMR2 95 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 FAM106AQ4KMX7 169 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 CFHR4Q92496 578 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 PTH2Q96A98 100 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 RNF183Q96D59 192 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 NSD1Q96L73 2696 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 IGHV3-11P01762 117 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 PF4V1P10720 104 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 FXYD2P54710 66 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 SRSF9Q13242 221 aaKnown RBP eCLIP6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 CD300EQ496F6 205 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 TMEM167BQ9NRX6 74 aa6.81□□□□□ -1.32
LIMCH1-209ENST00000509277 NPIPB3Q92617 1050 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 DPF1Q92782 380 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 C1orf159Q96HA4 380 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 HIST1H4GQ99525 98 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 PAXXQ9BUH6 204 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 J3QLI3 93 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 ATP6V0E1O15342 81 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 IFI27P40305 119 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 ZNF414Q96IQ9 312 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 ZNF479Q96JC4 524 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 OSTCQ9NRP0 149 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 PIGBOS1A0A0B4J2F0 54 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 IGLV2-23P01705 113 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 SEC11AP67812 179 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 NDPQ00604 133 aa6.8□□□□□ -1.32
LIMCH1-209ENST00000509277 A0A1W2PRX2 142 aa6.79□□□□□ -1.32
LIMCH1-209ENST00000509277 PSMB2P49721 201 aa6.79□□□□□ -1.32
LIMCH1-209ENST00000509277 SORL1Q92673 2214 aa6.79□□□□□ -1.32
LIMCH1-209ENST00000509277 MPDU1O75352 247 aa6.79□□□□□ -1.32
LIMCH1-209ENST00000509277 LTAP01374 205 aa6.79□□□□□ -1.32
LIMCH1-209ENST00000509277 WT1-ASQ06250 92 aa6.79□□□□□ -1.32
LIMCH1-209ENST00000509277 SCRT2Q9NQ03 307 aa6.79□□□□□ -1.32
LIMCH1-209ENST00000509277 MOB4Q9Y3A3 225 aa6.79□□□□□ -1.32
LIMCH1-209ENST00000509277 C10orf99Q6UWK7 81 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 GOLT1AQ6ZVE7 132 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 C8orf31Q8N9H6 132 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 Q8N9W7 124 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 TMEM167AQ8TBQ9 72 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 SPAG8Q99932 426 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 DKK2Q9UBU2 259 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 AGRNO00468 2067 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 PEX7O00628 323 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 MT-ATP8P03928 68 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 EVI2AP22794 236 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 GAGE13Q4V321 117 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 C8orf88P0DMB2 117 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 COX8AP10176 69 aa6.78□□□□□ -1.32
LIMCH1-209ENST00000509277 COX19Q49B96 90 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 AJUBAQ96IF1 538 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 MRPL27Q9P0M9 148 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 IGHV3OR16-13A0A075B7E8 117 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 IGHV3-74A0A0B4J1X5 117 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 OOSP1A8MZH6 123 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 FAM90A26D6RGX4 464 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 H3BRM9 83 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 SCGB1D4Q6XE38 83 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 OR5A1Q8NGJ0 315 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 TMEM14BQ9NUH8 114 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 CUBNO60494 3623 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 IGHV7-81A0A0B4J1V7 117 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 J3KRW8 73 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 NDUFA3O95167 84 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 ARMS2P0C7Q2 107 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 VDAC2P45880 294 aaPredicted RBP6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 PRCDQ00LT1 54 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 C10orf113Q5VZT2 155 aa6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 MRPL16Q9NX20 251 aaKnown RBP6.77□□□□□ -1.33
LIMCH1-209ENST00000509277 DNAJC9-AS1A6NH13 148 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 PMS2P5A8MQ11 134 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 SUB1P53999 127 aaKnown RBP eCLIP6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 LYZP61626 148 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 C2orf91Q6ZV80 131 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 PIFOQ8TCI5 191 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 MRAP2Q96G30 205 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 GRAMD2BQ96HH9 432 aa6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 FOXA2Q9Y261 457 aaPredicted RBP6.76□□□□□ -1.33
LIMCH1-209ENST00000509277 CYSLTR1Q9Y271 337 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 130.3 ms