RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 LINC00574Q9H8X3 128 aa10.48□□□□□ -0.73
GPC1-209ENST00000495100 CHD6Q8TD26 2715 aa10.48□□□□□ -0.73
GPC1-209ENST00000495100 TRAV30A0A087WSZ9 112 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 PSG9Q00887 426 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 TMEM158Q8WZ71 300 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 JMJD8Q96S16 334 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 FBN2P35556 2912 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 K7ERJ3 54 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 SAPCD1Q5SSQ6 148 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 DNLZQ5SXM8 178 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 IGHV3-64A0A075B6Q5 118 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 H7C2G1 150 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 IGLV2-11P01706 119 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 CFHR4Q92496 578 aa10.47□□□□□ -0.73
GPC1-209ENST00000495100 IGHV3-73A0A0B4J1V6 119 aa10.46□□□□□ -0.73
GPC1-209ENST00000495100 C19orf71A6NCJ1 209 aa10.46□□□□□ -0.73
GPC1-209ENST00000495100 A0A087WWL8 130 aa10.46□□□□□ -0.73
GPC1-209ENST00000495100 NHP2Q9NX24 153 aaKnown RBP10.46□□□□□ -0.73
GPC1-209ENST00000495100 COX11Q9Y6N1 276 aa10.46□□□□□ -0.73
GPC1-209ENST00000495100 HBDP02042 147 aa10.46□□□□□ -0.74
GPC1-209ENST00000495100 IGSF10Q6WRI0 2623 aa10.46□□□□□ -0.74
GPC1-209ENST00000495100 IGHV3OR16-12A0A075B7B8 117 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 OVOL3O00110 214 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 FSTL3O95633 263 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 HOXB4P17483 251 aaPredicted RBP10.45□□□□□ -0.74
GPC1-209ENST00000495100 FAM104BQ5XKR9 115 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 C12orf54Q6X4T0 127 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 PIP4P2Q8N4L2 257 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 ZNF256Q9Y2P7 627 aaPredicted RBP10.45□□□□□ -0.74
GPC1-209ENST00000495100 TEX15Q9BXT5 2789 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 PRB1P04280 392 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 ZNF688P0C7X2 276 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 SCGB1D4Q6XE38 83 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 AGPAT4-IT1Q9H0P7 198 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 FLNBO75369 2602 aaKnown RBP10.45□□□□□ -0.74
GPC1-209ENST00000495100 TRAV12-2A0A075B6T6 113 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 A0A1B0GXF2 115 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 MYCNOSP40205 109 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 C3orf36Q3SXR2 165 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 MYOZ3Q8TDC0 251 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 EEF1AKMT3Q96AZ1 226 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 CHCHD1Q96BP2 118 aaKnown RBP10.45□□□□□ -0.74
GPC1-209ENST00000495100 ZNF747Q9BV97 191 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 CBY1Q9Y3M2 126 aa10.45□□□□□ -0.74
GPC1-209ENST00000495100 SMIM17P0DL12 118 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 IGHV4-38-2P0DP08 117 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 CTRLP40313 264 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 ZC2HC1BQ5TFG8 222 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 KLF12Q9Y4X4 402 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 PAX8Q06710 450 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 UNQ9165/PRO28630Q6UXU0 137 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 IGLV11-55A0A075B6I3 123 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 NPFFO15130 113 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 Q8N9W7 124 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 PRSS22Q9GZN4 317 aa10.44□□□□□ -0.74
GPC1-209ENST00000495100 TNFRSF6BO95407 300 aa10.43□□□□□ -0.74
GPC1-209ENST00000495100 TMEM97Q5BJF2 176 aa10.43□□□□□ -0.74
GPC1-209ENST00000495100 OR2K2Q8NGT1 345 aa10.43□□□□□ -0.74
GPC1-209ENST00000495100 DUX3Q96PT4 197 aa10.43□□□□□ -0.74
GPC1-209ENST00000495100 TRAV41A0A0B4J266 112 aa10.43□□□□□ -0.74
GPC1-209ENST00000495100 CRYGBP07316 175 aa10.43□□□□□ -0.74
GPC1-209ENST00000495100 Q6ZS46 218 aa10.43□□□□□ -0.74
GPC1-209ENST00000495100 OR10J6PQ8NGY7 276 aa10.43□□□□□ -0.74
GPC1-209ENST00000495100 HAX1O00165 279 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 GNRH2O43555 120 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 ESDP10768 282 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 C8orf86Q6ZUL3 223 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 CCL19Q99731 98 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 TRAV12-3A0A0B4J271 114 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 FAM231BA6NCW3 169 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 EDN2P20800 178 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 NBL1P41271 181 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 UBE2V1Q13404 147 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 CLEC2AQ6UVW9 174 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 PET117Q6UWS5 81 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 ZNF492Q9P255 531 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 MSRB2Q9Y3D2 182 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 IGHV4-61A0A0C4DH41 118 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 BVES-AS1Q5T3Y7 98 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 C10orf99Q6UWK7 81 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 DTX2Q86UW9 622 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 ST20Q9HBF5 79 aa10.42□□□□□ -0.74
GPC1-209ENST00000495100 BSNQ9UPA5 3926 aa10.41□□□□□ -0.74
GPC1-209ENST00000495100 COL27A1Q8IZC6 1860 aaPredicted RBP10.41□□□□□ -0.74
GPC1-209ENST00000495100 RASL11AQ6T310 242 aa10.41□□□□□ -0.74
GPC1-209ENST00000495100 TNFRSF13BO14836 293 aaPredicted RBP10.41□□□□□ -0.74
GPC1-209ENST00000495100 HIST1H4GQ99525 98 aa10.41□□□□□ -0.74
GPC1-209ENST00000495100 SMAD5-AS1Q9Y6J3 95 aa10.41□□□□□ -0.74
GPC1-209ENST00000495100 CD300EQ496F6 205 aaPredicted RBP10.41□□□□□ -0.74
GPC1-209ENST00000495100 SRSF9Q13242 221 aaKnown RBP eCLIP10.4□□□□□ -0.74
GPC1-209ENST00000495100 MEGF9Q9H1U4 602 aa10.4□□□□□ -0.74
GPC1-209ENST00000495100 JPT2Q9H910 190 aa10.4□□□□□ -0.74
GPC1-209ENST00000495100 CD7P09564 240 aa10.4□□□□□ -0.74
GPC1-209ENST00000495100 FLNAP21333 2647 aaKnown RBP10.4□□□□□ -0.75
GPC1-209ENST00000495100 LOC107984156A0A0G2JMH3 177 aa10.4□□□□□ -0.75
GPC1-209ENST00000495100 KLF5Q13887 457 aaPredicted RBP10.4□□□□□ -0.75
GPC1-209ENST00000495100 ARL17AQ8IVW1 177 aa10.4□□□□□ -0.75
GPC1-209ENST00000495100 RPL39LQ96EH5 51 aaKnown RBP10.4□□□□□ -0.75
GPC1-209ENST00000495100 TMEM8BA6NDV4 472 aa10.39□□□□□ -0.75
GPC1-209ENST00000495100 OR11H6Q8NGC7 330 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms