RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 TP53TG3Q9ULZ0 132 aa12.83□□□□□ -0.36
PRPF40A-209ENST00000486100 LINC00588Q9Y4M8 146 aa12.83□□□□□ -0.36
PRPF40A-209ENST00000486100 LENEPQ9Y5L5 61 aa12.83□□□□□ -0.36
PRPF40A-209ENST00000486100 TRGV1A0A0A0MS02 117 aa12.82□□□□□ -0.36
PRPF40A-209ENST00000486100 A0A0J9YY99 117 aa12.82□□□□□ -0.36
PRPF40A-209ENST00000486100 SPINK4O60575 86 aa12.82□□□□□ -0.36
PRPF40A-209ENST00000486100 SOHLH1Q5JUK2 328 aa12.82□□□□□ -0.36
PRPF40A-209ENST00000486100 FAM74A1Q5RGS3 127 aa12.82□□□□□ -0.36
PRPF40A-209ENST00000486100 HYLS1Q96M11 299 aa12.82□□□□□ -0.36
PRPF40A-209ENST00000486100 Q5BKY6 102 aa12.81□□□□□ -0.36
PRPF40A-209ENST00000486100 C1orf134Q5TEV5 83 aa12.81□□□□□ -0.36
PRPF40A-209ENST00000486100 ARL6IP6Q8N6S5 226 aa12.81□□□□□ -0.36
PRPF40A-209ENST00000486100 OR2G3Q8NGZ4 309 aa12.81□□□□□ -0.36
PRPF40A-209ENST00000486100 CMTM2Q8TAZ6 248 aa12.81□□□□□ -0.36
PRPF40A-209ENST00000486100 TMED6Q8WW62 240 aa12.81□□□□□ -0.36
PRPF40A-209ENST00000486100 ARPC5LQ9BPX5 153 aa12.81□□□□□ -0.36
PRPF40A-209ENST00000486100 GIPP09681 153 aaPredicted RBP12.8□□□□□ -0.36
PRPF40A-209ENST00000486100 SSX7Q7RTT5 188 aa12.8□□□□□ -0.36
PRPF40A-209ENST00000486100 HSD17B11Q8NBQ5 300 aa12.8□□□□□ -0.36
PRPF40A-209ENST00000486100 PSMG3Q9BT73 122 aaPredicted RBP12.8□□□□□ -0.36
PRPF40A-209ENST00000486100 NBDYA0A0U1RRE5 68 aa12.79□□□□□ -0.36
PRPF40A-209ENST00000486100 HMGB3O15347 200 aaKnown RBP12.79□□□□□ -0.36
PRPF40A-209ENST00000486100 Q6AWC8 147 aa12.79□□□□□ -0.36
PRPF40A-209ENST00000486100 HERC2O95714 4834 aa12.78□□□□□ -0.36
PRPF40A-209ENST00000486100 STAG3L2P0CL84 134 aa12.78□□□□□ -0.36
PRPF40A-209ENST00000486100 STAG3L3P0CL85 134 aa12.78□□□□□ -0.36
PRPF40A-209ENST00000486100 ATP6V0CP27449 155 aa12.78□□□□□ -0.36
PRPF40A-209ENST00000486100 CDC34P49427 236 aaPredicted RBP12.78□□□□□ -0.36
PRPF40A-209ENST00000486100 SERF2P84101 59 aa12.78□□□□□ -0.36
PRPF40A-209ENST00000486100 VSIG2Q96IQ7 327 aa12.78□□□□□ -0.36
PRPF40A-209ENST00000486100 NACAE9PAV3 2078 aa12.77□□□□□ -0.36
PRPF40A-209ENST00000486100 MBP02144 154 aa12.77□□□□□ -0.37
PRPF40A-209ENST00000486100 ZNF415Q09FC8 603 aa12.77□□□□□ -0.37
PRPF40A-209ENST00000486100 ESRGQ1W209 222 aa12.77□□□□□ -0.37
PRPF40A-209ENST00000486100 MUC21Q5SSG8 566 aa12.77□□□□□ -0.37
PRPF40A-209ENST00000486100 GOLT1AQ6ZVE7 132 aa12.77□□□□□ -0.37
PRPF40A-209ENST00000486100 INO80EQ8NBZ0 244 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-209ENST00000486100 ST6GAL2Q96JF0 529 aa12.77□□□□□ -0.37
PRPF40A-209ENST00000486100 Q9H8V8 135 aa12.77□□□□□ -0.37
PRPF40A-209ENST00000486100 RPH3ALQ9UNE2 315 aa12.77□□□□□ -0.37
PRPF40A-209ENST00000486100 ARL14EPLP0DKL9 152 aa12.76□□□□□ -0.37
PRPF40A-209ENST00000486100 FAM159AQ6UWV7 190 aa12.76□□□□□ -0.37
PRPF40A-209ENST00000486100 SUN5Q8TC36 379 aa12.76□□□□□ -0.37
PRPF40A-209ENST00000486100 RAB24Q969Q5 203 aa12.76□□□□□ -0.37
PRPF40A-209ENST00000486100 MRPL16Q9NX20 251 aaKnown RBP12.76□□□□□ -0.37
PRPF40A-209ENST00000486100 MDFICQ9P1T7 246 aa12.76□□□□□ -0.37
PRPF40A-209ENST00000486100 TNFSF18Q9UNG2 199 aa12.75□□□□□ -0.37
PRPF40A-209ENST00000486100 KIAA1109Q2LD37 5005 aa12.74□□□□□ -0.37
PRPF40A-209ENST00000486100 A0A096LPF7 62 aa12.74□□□□□ -0.37
PRPF40A-209ENST00000486100 GCHFRP30047 84 aa12.74□□□□□ -0.37
PRPF40A-209ENST00000486100 SLAQ13239 276 aa12.74□□□□□ -0.37
PRPF40A-209ENST00000486100 C6orf223Q8N319 242 aa12.74□□□□□ -0.37
PRPF40A-209ENST00000486100 SPXQ9BT56 116 aa12.74□□□□□ -0.37
PRPF40A-209ENST00000486100 UPK3BQ9BT76 320 aa12.74□□□□□ -0.37
PRPF40A-209ENST00000486100 TRGV11A0A075B6L2 103 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 FXYD6-FXYD2A0A087WZ82 144 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 TRAV8-1A0A0A6YYK1 113 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 RNF222A6NCQ9 220 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 IGHV3-53P01767 116 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 GNG5P63218 68 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 TMEM183BQ1AE95 376 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 TDRG1Q3Y452 100 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 RPL7L1Q6DKI1 246 aaKnown RBP12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 TMEM183AQ8IXX5 376 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 OR2T35Q8NGX2 323 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 TVP23CQ96ET8 276 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 ACTR3CQ9C0K3 210 aaPredicted RBP12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 SH3BGRL3Q9H299 93 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 TREM1Q9NP99 234 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 PRO0255Q9UI72 69 aa12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 MRPS16Q9Y3D3 137 aaKnown RBP12.73□□□□□ -0.37
PRPF40A-209ENST00000486100 PKD1P98161 4303 aa12.72□□□□□ -0.37
PRPF40A-209ENST00000486100 BORCS7-ASMTA0A0B4J1R7 106 aa12.72□□□□□ -0.37
PRPF40A-209ENST00000486100 TRAV21A0A0B4J279 112 aa12.72□□□□□ -0.37
PRPF40A-209ENST00000486100 SERTM2A0A1B0GWG4 89 aa12.72□□□□□ -0.37
PRPF40A-209ENST00000486100 PAX4O43316 350 aa12.72□□□□□ -0.37
PRPF40A-209ENST00000486100 CXorf1O96002 111 aa12.72□□□□□ -0.37
PRPF40A-209ENST00000486100 FHL2Q14192 279 aa12.72□□□□□ -0.37
PRPF40A-209ENST00000486100 RASL10AQ92737 203 aa12.72□□□□□ -0.37
PRPF40A-209ENST00000486100 HHLA3Q9XRX5 114 aa12.72□□□□□ -0.37
PRPF40A-209ENST00000486100 DYNC1H1Q14204 4646 aaKnown RBP12.71□□□□□ -0.37
PRPF40A-209ENST00000486100 TCRAP04437 139 aa12.71□□□□□ -0.37
PRPF40A-209ENST00000486100 C5orf17Q8NAS9 161 aa12.71□□□□□ -0.37
PRPF40A-209ENST00000486100 TMEM167BQ9NRX6 74 aa12.71□□□□□ -0.37
PRPF40A-209ENST00000486100 NAGKQ9UJ70 344 aa12.71□□□□□ -0.37
PRPF40A-209ENST00000486100 DNAH11Q96DT5 4516 aa12.7□□□□□ -0.38
PRPF40A-209ENST00000486100 GNRH2O43555 120 aa12.7□□□□□ -0.38
PRPF40A-209ENST00000486100 CRYBA4P53673 196 aa12.7□□□□□ -0.38
PRPF40A-209ENST00000486100 SUMO1P63165 101 aaKnown RBP12.7□□□□□ -0.38
PRPF40A-209ENST00000486100 IQCF2Q8IXL9 164 aa12.7□□□□□ -0.38
PRPF40A-209ENST00000486100 SGK494Q96LW2 274 aa12.7□□□□□ -0.38
PRPF40A-209ENST00000486100 ICOSQ9Y6W8 199 aa12.7□□□□□ -0.38
PRPF40A-209ENST00000486100 F6UZH7 168 aa12.69□□□□□ -0.38
PRPF40A-209ENST00000486100 K7EQM0 130 aa12.69□□□□□ -0.38
PRPF40A-209ENST00000486100 TNP2Q05952 138 aa12.69□□□□□ -0.38
PRPF40A-209ENST00000486100 TTC32Q5I0X7 151 aa12.69□□□□□ -0.38
PRPF40A-209ENST00000486100 C8orf49Q96NF6 230 aa12.69□□□□□ -0.38
PRPF40A-209ENST00000486100 NDFIP1Q9BT67 221 aa12.69□□□□□ -0.38
PRPF40A-209ENST00000486100 EPDR1Q9UM22 224 aa12.69□□□□□ -0.38
PRPF40A-209ENST00000486100 hCG_2014768A0A024R1R8 64 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms