RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 HIST3H2BBQ8N257 126 aa7□□□□□ -1.29
HDAC3-208ENST00000476739 RPP25LQ8N5L8 163 aaKnown RBP7□□□□□ -1.29
HDAC3-208ENST00000476739 OR10G4Q8NGN3 311 aa7□□□□□ -1.29
HDAC3-208ENST00000476739 OR10G9Q8NGN4 311 aa7□□□□□ -1.29
HDAC3-208ENST00000476739 OR10G7Q8NGN6 311 aa7□□□□□ -1.29
HDAC3-208ENST00000476739 OR2G3Q8NGZ4 309 aa7□□□□□ -1.29
HDAC3-208ENST00000476739 PSMG3Q9BT73 122 aaPredicted RBP7□□□□□ -1.29
HDAC3-208ENST00000476739 C1QTNF4Q9BXJ3 329 aa7□□□□□ -1.29
HDAC3-208ENST00000476739 TMEM242Q9NWH2 141 aa7□□□□□ -1.29
HDAC3-208ENST00000476739 BORCS7-ASMTA0A0B4J1R7 106 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 MIFP14174 115 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 ZNF25P17030 456 aaPredicted RBP6.99□□□□□ -1.29
HDAC3-208ENST00000476739 ERVFC1-1P60608 527 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 ERCC8Q13216 396 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 IQCJQ1A5X6 159 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 TMEM241Q24JQ0 296 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 KHDC3LQ587J8 217 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 SSX7Q7RTT5 188 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 OR2D3Q8NGH3 330 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 BTF3L4Q96K17 158 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 C11orf68Q9H3H3 251 aaKnown RBP6.99□□□□□ -1.29
HDAC3-208ENST00000476739 VAX2Q9UIW0 290 aa6.99□□□□□ -1.29
HDAC3-208ENST00000476739 A0A1W2PPV4 95 aa6.98□□□□□ -1.29
HDAC3-208ENST00000476739 CT45A10P0DMU9 189 aa6.98□□□□□ -1.29
HDAC3-208ENST00000476739 CDKN1BP46527 198 aa6.98□□□□□ -1.29
HDAC3-208ENST00000476739 CDC34P49427 236 aaPredicted RBP6.98□□□□□ -1.29
HDAC3-208ENST00000476739 TAS2R45P59539 299 aa6.98□□□□□ -1.29
HDAC3-208ENST00000476739 NANOS2P60321 138 aaKnown RBP6.98□□□□□ -1.29
HDAC3-208ENST00000476739 UBE2L3P68036 154 aaKnown RBP6.98□□□□□ -1.29
HDAC3-208ENST00000476739 PMS2P11Q13670 270 aa6.98□□□□□ -1.29
HDAC3-208ENST00000476739 MRPL53Q96EL3 112 aaKnown RBP6.98□□□□□ -1.29
HDAC3-208ENST00000476739 IGF2BP2-AS1Q96M15 143 aa6.98□□□□□ -1.29
HDAC3-208ENST00000476739 PACRGQ96M98 296 aaPredicted RBP6.98□□□□□ -1.29
HDAC3-208ENST00000476739 YPEL4Q96NS1 127 aa6.98□□□□□ -1.29
HDAC3-208ENST00000476739 Q9H3A6 140 aa6.98□□□□□ -1.29
HDAC3-208ENST00000476739 PLA2G2EQ9NZK7 142 aa6.98□□□□□ -1.29
HDAC3-208ENST00000476739 CELA1Q9UNI1 258 aa6.98□□□□□ -1.29
HDAC3-208ENST00000476739 KMT2CQ8NEZ4 4911 aaKnown RBP6.98□□□□□ -1.29
HDAC3-208ENST00000476739 IGKV2-40A0A087WW87 121 aaPredicted RBP6.97□□□□□ -1.29
HDAC3-208ENST00000476739 UMAD1C9J7I0 102 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 NPIPB6E9PJ23 425 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 J3KRW8 73 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 IGKV2D-40P01614 121 aaPredicted RBP6.97□□□□□ -1.29
HDAC3-208ENST00000476739 SEC11BP0C7V7 166 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 STAG3L2P0CL84 134 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 STAG3L3P0CL85 134 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 ARL14EPLP0DKL9 152 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 SERF2P84101 59 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 PNRC1Q12796 327 aaPredicted RBP6.97□□□□□ -1.29
HDAC3-208ENST00000476739 ZNF726P1Q15940 193 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 ZNF674Q2M3X9 581 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 COA6Q5JTJ3 125 aaKnown RBP6.97□□□□□ -1.29
HDAC3-208ENST00000476739 PQLC2Q6ZP29 291 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 OR10J6PQ8NGY7 276 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 TMED6Q8WW62 240 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 VGLL1Q99990 258 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 AGPAT4-IT1Q9H0P7 198 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 AAMDCQ9H7C9 122 aa6.97□□□□□ -1.29
HDAC3-208ENST00000476739 INSP01308 110 aa6.96□□□□□ -1.3
HDAC3-208ENST00000476739 RPS20P60866 119 aaKnown RBP6.96□□□□□ -1.3
HDAC3-208ENST00000476739 SOHLH1Q5JUK2 328 aa6.96□□□□□ -1.3
HDAC3-208ENST00000476739 TMEM183AQ8IXX5 376 aa6.96□□□□□ -1.3
HDAC3-208ENST00000476739 C11orf45Q8TAV5 145 aa6.96□□□□□ -1.3
HDAC3-208ENST00000476739 GNPNAT1Q96EK6 184 aaPredicted RBP6.96□□□□□ -1.3
HDAC3-208ENST00000476739 TMEM208Q9BTX3 173 aa6.96□□□□□ -1.3
HDAC3-208ENST00000476739 IFITM10A6NMD0 228 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 ZNF705GA8MUZ8 300 aaPredicted RBP6.95□□□□□ -1.3
HDAC3-208ENST00000476739 PHOX2AO14813 284 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 AMBPP02760 352 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 AZU1P20160 251 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 GCHFRP30047 84 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 EMP1P54849 157 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 SRSF3P84103 164 aaKnown RBP6.95□□□□□ -1.3
HDAC3-208ENST00000476739 C21orf62-AS1Q17RA5 79 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 GFI1BQ5VTD9 330 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 C9orf47Q6ZRZ4 202 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 LYPD1Q8N2G4 141 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 TMEM18Q96B42 140 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 FAM19A4Q96LR4 140 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 CTDSP1Q9GZU7 261 aa6.95□□□□□ -1.3
HDAC3-208ENST00000476739 PGPA6NDG6 321 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 SMIM9A6NGZ8 99 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 DIRC3C9JPN6 131 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 K7EP13 123 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 HIST1H2BKO60814 126 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 HBE1P02100 147 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 HIST1H2BJP06899 126 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 HIST1H2BOP23527 126 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 HIST1H2BBP33778 126 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 FHITP49789 147 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 FGF8P55075 233 aaPredicted RBP6.94□□□□□ -1.3
HDAC3-208ENST00000476739 HIST1H2BDP58876 126 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 HIST1H2BCP62807 126 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 GNG5P63218 68 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 HIST2H2BEQ16778 126 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 RRN3P1Q2M238 152 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 C12orf74Q32Q52 190 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.94□□□□□ -1.3
HDAC3-208ENST00000476739 COL5A1-AS1Q5SY13 56 aa6.94□□□□□ -1.3
HDAC3-208ENST00000476739 PRR9Q5T870 116 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms