RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 IGHV1-24A0A0C4DH33 117 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 A6NED7 52 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 H3BUT2 72 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 LYRM1O43325 122 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 LY6HO94772 140 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 IGHV1-46P01743 117 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 TRGV3P03979 118 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 CCKP06307 115 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 KRTAP1-4P0C5Y4 121 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 LYZP61626 148 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 ZNF345Q14585 488 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 PMCHL1Q16048 86 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 Q6ZR54 194 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 NTM-AS1Q6ZSK4 140 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 COMMD6Q7Z4G1 85 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 HMGN2P46Q86SG4 172 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 AQP3Q92482 292 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 ABCA8O94911 1581 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 KNDC1Q76NI1 1749 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 ARHGEF28Q8N1W1 1705 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 ABCA9Q8IUA7 1624 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 DUOX2Q9NRD8 1548 aa3.19□□□□□ -1.9
CCDC88A-210ENST00000468534 DSCAML1Q8TD84 2053 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 NRXN1Q9ULB1 1477 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 TRBV24-1A0A075B6N3 115 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 IGHV1-3A0A0C4DH29 117 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 A0A1W2PQD3 144 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 A6NDX4 124 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 HMSDA8MTL9 139 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 GNRH2O43555 120 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 INSP01308 110 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 PIRTP0C851 137 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 CEND1Q8N111 149 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 SERP2Q8N6R1 65 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 Q8N9W7 124 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 Q8NDZ9 215 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 RETNLBQ9BQ08 111 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 MON2Q7Z3U7 1717 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 ADGRB3O60242 1522 aa3.18□□□□□ -1.9
CCDC88A-210ENST00000468534 PPLO60437 1756 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 MAST2Q6P0Q8 1798 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 ABCA7Q8IZY2 2146 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 MYH7BA7E2Y1 1941 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 RAI1Q7Z5J4 1906 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 MYH13Q9UKX3 1938 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 TRAV17A0A0B4J275 112 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 MDFIC2A0A1B0GVS7 189 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 TMEM223A0PJW6 202 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 H3BMM0 161 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 IGLV1-51P01701 117 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 MSMBP08118 114 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 PIPP12273 146 aaPredicted RBP3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 KRTDAPP60985 99 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 Q1T7F1 81 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 DYNAPQ8N1N2 210 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 UBE2WQ96B02 151 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 OR8B2Q96RD0 313 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 TRGV9Q99603 122 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 LINC00467Q9BRT7 94 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 CST11Q9H112 138 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 IQGAP3Q86VI3 1631 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 EFCAB5A4FU69 1503 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 POLEQ07864 2286 aa3.17□□□□□ -1.9
CCDC88A-210ENST00000468534 GOLGA3Q08378 1498 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 EML6Q6ZMW3 1958 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 TSPOAP1O95153 1857 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 TARBP1Q13395 1621 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 KANTRA0A1W2PQU2 76 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 CCL16O15467 120 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 RPL28P46779 137 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 RBM3P98179 157 aaKnown RBP3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 SYCNQ0VAF6 134 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 ELOBQ15370 118 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 IGFBP7Q16270 282 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 SDIM1Q6ZPB5 146 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 Q8IYB0 196 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 Q8N976 141 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 KLHL30-AS1Q8NEE0 82 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 OR8B3Q8NGG8 313 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 LINC01600Q96MT4 127 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 ZNF646O15015 1829 aaPredicted RBP3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 ATAD5Q96QE3 1844 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 CFAP74Q9C0B2 1584 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 LAMC3Q9Y6N6 1575 aa3.16□□□□□ -1.9
CCDC88A-210ENST00000468534 PTPN23Q9H3S7 1636 aa3.15□□□□□ -1.9
CCDC88A-210ENST00000468534 PRRC2AP48634 2157 aaKnown RBP3.15□□□□□ -1.9
CCDC88A-210ENST00000468534 STRCQ7RTU9 1775 aa3.15□□□□□ -1.9
CCDC88A-210ENST00000468534 TET3O43151 1660 aa3.15□□□□□ -1.9
CCDC88A-210ENST00000468534 KIF1AQ12756 1690 aa3.15□□□□□ -1.9
CCDC88A-210ENST00000468534 NUP98P52948 1817 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 IGKV1D-17A0A075B6S4 117 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 IGHV3-15A0A0B4J1V0 119 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 IGHV3-73A0A0B4J1V6 119 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 A0A1W2PPR1 153 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 CPSF4O95639 269 aaKnown RBP3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 SFTA3P0C7M3 94 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 P0C879 139 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 CD24P25063 80 aa3.15□□□□□ -1.91
CCDC88A-210ENST00000468534 XCL1P47992 114 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms