RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 ACTL10Q5JWF8 245 aa8.11□□□□□ -1.11
SCN9A-205ENST00000454569 DEFB125Q8N687 156 aa8.11□□□□□ -1.11
SCN9A-205ENST00000454569 FMC1Q96HJ9 113 aa8.11□□□□□ -1.11
SCN9A-205ENST00000454569 SAV1Q9H4B6 383 aaPredicted RBP8.11□□□□□ -1.11
SCN9A-205ENST00000454569 NPIPB6E9PJ23 425 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 S100A9P06702 114 aaKnown RBP8.1□□□□□ -1.11
SCN9A-205ENST00000454569 FLI1Q01543 452 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-205ENST00000454569 C9orf47Q6ZRZ4 202 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 Q86TA4 180 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 TMEM75Q8N9X5 138 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 OCC1Q8TAD7 63 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 ISOC2Q96AB3 205 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 CLEC5AQ9NY25 188 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 RBAKDNA6NC62 111 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 PRSS47A8MTI9 375 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 OR11H12B2RN74 326 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 H3BMM0 161 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 K7EN84 100 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 ZNF80P51504 273 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-205ENST00000454569 FXYD7P58549 80 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 EGFEM1PQ0D2K5 195 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 OR5I1Q13606 314 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 PRR9Q5T870 116 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 AMTNQ6UX39 209 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 LINC00322Q6ZN03 302 aaPredicted RBP8.1□□□□□ -1.11
SCN9A-205ENST00000454569 FAM19A4Q96LR4 140 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 CTDSP1Q9GZU7 261 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 TMEM242Q9NWH2 141 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 ZNF492Q9P255 531 aa8.1□□□□□ -1.11
SCN9A-205ENST00000454569 SERTM2A0A1B0GWG4 89 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 H7BYZ3 331 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 J3KRW8 73 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 LTAP01374 205 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 PRB2P02812 416 aaPredicted RBP8.09□□□□□ -1.11
SCN9A-205ENST00000454569 MGST1P10620 155 aaKnown RBP8.09□□□□□ -1.11
SCN9A-205ENST00000454569 CRIP1P50238 77 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 SAMD13Q5VXD3 122 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 FOXI2Q6ZQN5 318 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 OR4B1Q8NGF8 309 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 OR10J6PQ8NGY7 276 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 ZC2HC1AQ96GY0 325 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 SFRP2Q96HF1 295 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 MLST8Q9BVC4 326 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 TUBA4BQ9H853 241 aa8.09□□□□□ -1.11
SCN9A-205ENST00000454569 CXorf65A6NEN9 183 aa8.08□□□□□ -1.12
SCN9A-205ENST00000454569 PPP1R2P9O14990 202 aa8.08□□□□□ -1.12
SCN9A-205ENST00000454569 HLA-DRB4P13762 266 aa8.08□□□□□ -1.12
SCN9A-205ENST00000454569 ZNF138P52744 262 aa8.08□□□□□ -1.12
SCN9A-205ENST00000454569 BAGE2Q86Y30 109 aa8.08□□□□□ -1.12
SCN9A-205ENST00000454569 C15orf54Q8N8G6 183 aa8.08□□□□□ -1.12
SCN9A-205ENST00000454569 SMIM12Q96EX1 92 aa8.08□□□□□ -1.12
SCN9A-205ENST00000454569 HLA-DRB4X5D2U9 266 aa8.08□□□□□ -1.12
SCN9A-205ENST00000454569 NBEAL2Q6ZNJ1 2754 aa8.07□□□□□ -1.12
SCN9A-205ENST00000454569 TRBV6-1A0A0K0K1D8 114 aa8.07□□□□□ -1.12
SCN9A-205ENST00000454569 A8MTW9 85 aa8.07□□□□□ -1.12
SCN9A-205ENST00000454569 M0R2Z0 102 aa8.07□□□□□ -1.12
SCN9A-205ENST00000454569 GCGP01275 180 aa8.07□□□□□ -1.12
SCN9A-205ENST00000454569 TMEM78Q5T7P6 136 aa8.07□□□□□ -1.12
SCN9A-205ENST00000454569 EBLN2Q6P2I7 272 aa8.07□□□□□ -1.12
SCN9A-205ENST00000454569 ZFAND2AQ8N6M9 145 aa8.07□□□□□ -1.12
SCN9A-205ENST00000454569 LINC00477Q96M19 166 aa8.07□□□□□ -1.12
SCN9A-205ENST00000454569 CDIP1Q9H305 208 aa8.07□□□□□ -1.12
SCN9A-205ENST00000454569 TRAV12-2A0A075B6T6 113 aa8.06□□□□□ -1.12
SCN9A-205ENST00000454569 ERVFC1-1P60608 527 aa8.06□□□□□ -1.12
SCN9A-205ENST00000454569 TRPT1Q86TN4 253 aaKnown RBP8.06□□□□□ -1.12
SCN9A-205ENST00000454569 OR10G8Q8NGN5 311 aa8.06□□□□□ -1.12
SCN9A-205ENST00000454569 FAM110AQ9BQ89 295 aa8.06□□□□□ -1.12
SCN9A-205ENST00000454569 URGCP-MRPS24S4R325 110 aa8.06□□□□□ -1.12
SCN9A-205ENST00000454569 FBLL1A6NHQ2 334 aaKnown RBP8.05□□□□□ -1.12
SCN9A-205ENST00000454569 CRXO43186 299 aaPredicted RBP8.05□□□□□ -1.12
SCN9A-205ENST00000454569 GIG44P09565 113 aaPredicted RBP8.05□□□□□ -1.12
SCN9A-205ENST00000454569 RBMY1A1P0DJD3 496 aaKnown RBP8.05□□□□□ -1.12
SCN9A-205ENST00000454569 RBMY1CP0DJD4 496 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 RPL35AP18077 110 aaKnown RBP8.05□□□□□ -1.12
SCN9A-205ENST00000454569 S100PP25815 95 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 RBMY1FQ15415 496 aaKnown RBP8.05□□□□□ -1.12
SCN9A-205ENST00000454569 SPINK13Q1W4C9 94 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 IBA57Q5T440 356 aaKnown RBP8.05□□□□□ -1.12
SCN9A-205ENST00000454569 ZNF575Q86XF7 245 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 TMEM183AQ8IXX5 376 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 C11orf21Q9P2W6 132 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 COLCA2A8K830 154 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 ELOBQ15370 118 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 PRR27Q6MZM9 219 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 KCNIP4Q6PIL6 250 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 GTSCR1Q86UQ5 136 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 RNASE7Q9H1E1 156 aaKnown RBP8.05□□□□□ -1.12
SCN9A-205ENST00000454569 SRD5A3Q9H8P0 318 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 BIN3Q9NQY0 253 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 OSTCQ9NRP0 149 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 ZFP30Q9Y2G7 519 aa8.05□□□□□ -1.12
SCN9A-205ENST00000454569 DUSP14O95147 198 aaKnown RBP8.04□□□□□ -1.12
SCN9A-205ENST00000454569 PRM2P04554 102 aa8.04□□□□□ -1.12
SCN9A-205ENST00000454569 CRISP2P16562 243 aa8.04□□□□□ -1.12
SCN9A-205ENST00000454569 CMC4P56277 68 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-205ENST00000454569 COX8CQ7Z4L0 72 aa8.04□□□□□ -1.12
SCN9A-205ENST00000454569 STHQ8IWL8 128 aa8.04□□□□□ -1.12
SCN9A-205ENST00000454569 C19orf71A6NCJ1 209 aa8.03□□□□□ -1.12
SCN9A-205ENST00000454569 KLLNB2CW77 178 aa8.03□□□□□ -1.12
SCN9A-205ENST00000454569 RNASE4P34096 147 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms