RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 SHANK2-AS3Q9BTD1 123 aa10.6□□□□□ -0.71
USP40-208ENST00000450966 VPREB3Q9UKI3 123 aa10.6□□□□□ -0.71
USP40-208ENST00000450966 TCL1BO95988 128 aa10.59□□□□□ -0.71
USP40-208ENST00000450966 HRCT1Q6UXD1 115 aa10.59□□□□□ -0.71
USP40-208ENST00000450966 LYNX1G3V0Z9 82 aa10.59□□□□□ -0.71
USP40-208ENST00000450966 LYNX1P0DP58 116 aa10.59□□□□□ -0.71
USP40-208ENST00000450966 COX7CP15954 63 aa10.59□□□□□ -0.71
USP40-208ENST00000450966 PAX8Q06710 450 aa10.59□□□□□ -0.71
USP40-208ENST00000450966 PRR30Q53SZ7 412 aaPredicted RBP10.59□□□□□ -0.71
USP40-208ENST00000450966 MUSTN1Q8IVN3 82 aa10.59□□□□□ -0.71
USP40-208ENST00000450966 SEC61GP60059 68 aa10.59□□□□□ -0.71
USP40-208ENST00000450966 DTX1Q86Y01 620 aa10.59□□□□□ -0.71
USP40-208ENST00000450966 FNDC1Q4ZHG4 1894 aaPredicted RBP10.59□□□□□ -0.71
USP40-208ENST00000450966 XGP55808 180 aa10.59□□□□□ -0.71
USP40-208ENST00000450966 C1orf147Q96MC9 270 aaPredicted RBP10.59□□□□□ -0.71
USP40-208ENST00000450966 C9orf139Q6ZV77 190 aa10.58□□□□□ -0.72
USP40-208ENST00000450966 WFDC11Q8NEX6 87 aa10.58□□□□□ -0.72
USP40-208ENST00000450966 SRRM5B3KS81 715 aa10.58□□□□□ -0.72
USP40-208ENST00000450966 TMEM178BH3BS89 294 aa10.58□□□□□ -0.72
USP40-208ENST00000450966 PLA2G5P39877 138 aa10.58□□□□□ -0.72
USP40-208ENST00000450966 UBE2DNLQ8IWF7 75 aa10.58□□□□□ -0.72
USP40-208ENST00000450966 RNF152Q8N8N0 203 aa10.58□□□□□ -0.72
USP40-208ENST00000450966 KIF26BQ2KJY2 2108 aa10.58□□□□□ -0.72
USP40-208ENST00000450966 H0YGX0 51 aa10.57□□□□□ -0.72
USP40-208ENST00000450966 EGR2P11161 476 aaPredicted RBP10.57□□□□□ -0.72
USP40-208ENST00000450966 C10orf105Q8TEF2 133 aa10.57□□□□□ -0.72
USP40-208ENST00000450966 TMEM14CQ9P0S9 112 aa10.57□□□□□ -0.72
USP40-208ENST00000450966 ERCC8Q13216 396 aa10.57□□□□□ -0.72
USP40-208ENST00000450966 MPDZO75970 2070 aa10.57□□□□□ -0.72
USP40-208ENST00000450966 IGHV1-69DA0A0B4J2H0 117 aa10.57□□□□□ -0.72
USP40-208ENST00000450966 NRGNQ92686 78 aa10.57□□□□□ -0.72
USP40-208ENST00000450966 SERP2Q8N6R1 65 aa10.57□□□□□ -0.72
USP40-208ENST00000450966 SLC25A29Q8N8R3 303 aa10.57□□□□□ -0.72
USP40-208ENST00000450966 WFDC9Q8NEX5 89 aa10.57□□□□□ -0.72
USP40-208ENST00000450966 NDUFA11Q86Y39 141 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 SIGLEC15Q6ZMC9 328 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 SPTSSBQ8NFR3 76 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 C6orf226Q5I0X4 101 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 FAM120AOSQ5T036 256 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 C8orf49Q96NF6 230 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 ZDBF2Q9HCK1 2354 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 SIP14410 1827 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 IGKV1-39P01597 117 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 IGKV1D-39P04432 117 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 C20orf197Q8N268 126 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 C11orf44Q8N8P7 122 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 MPLKIPQ8TAP9 179 aa10.56□□□□□ -0.72
USP40-208ENST00000450966 PRB3Q04118 309 aaPredicted RBP10.56□□□□□ -0.72
USP40-208ENST00000450966 SMIM26A0A096LP01 95 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 FAM19A5Q7Z5A7 132 aaPredicted RBP10.55□□□□□ -0.72
USP40-208ENST00000450966 MYOFQ9NZM1 2061 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 PRR20EP86478 221 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 PRR20CP86479 221 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 PRR20DP86480 221 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 PRR20BP86481 221 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 PRR20AP86496 221 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 ODF1Q14990 250 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 SUMO4Q6EEV6 95 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 RETNQ9HD89 108 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 RLFQ13129 1914 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 IGKV1-6A0A0C4DH72 117 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 I3L3M4 83 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 NDUFC1O43677 76 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 FHL1Q13642 323 aa10.55□□□□□ -0.72
USP40-208ENST00000450966 LGALS9O00182 355 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 TMEM14BQ9NUH8 114 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 F8WEM9 126 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 BUB3O43684 328 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 Q6P435 159 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 VMO1Q7Z5L0 202 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 EP300Q09472 2414 aaPredicted RBP10.54□□□□□ -0.72
USP40-208ENST00000450966 RTTNQ86VV8 2226 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 SNRNP200O75643 2136 aaKnown RBP10.54□□□□□ -0.72
USP40-208ENST00000450966 ABCA7Q8IZY2 2146 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 ANK1P16157 1881 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 JMJD7-PLA2G4BH0Y9G9 81 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 PFN2P35080 140 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 FXYD5Q96DB9 178 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 USMG5Q96IX5 58 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 PLXNA3P51805 1871 aa10.54□□□□□ -0.72
USP40-208ENST00000450966 LYRM9A8MSI8 78 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 INS-IGF2F8WCM5 200 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 WISP1O95388 367 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 INSP01308 110 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 UFSP1Q6NVU6 142 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 PRR25Q96S07 402 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 ATP5EP2Q5VTU8 51 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 ZFP2Q6ZN57 461 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 INTS1Q8N201 2190 aaKnown RBP10.53□□□□□ -0.72
USP40-208ENST00000450966 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.53□□□□□ -0.72
USP40-208ENST00000450966 C10orf55Q5SWW7 151 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 IGF2BP2-AS1Q96M15 143 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 TTTY13Q9BZ97 58 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 ZNF581Q9P0T4 197 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 SDHAF1A6NFY7 115 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 MSMBP08118 114 aa10.53□□□□□ -0.72
USP40-208ENST00000450966 B3GALT5-AS1P59052 145 aa10.52□□□□□ -0.72
USP40-208ENST00000450966 RPL36AP83881 106 aaKnown RBP10.52□□□□□ -0.72
USP40-208ENST00000450966 RPL36ALQ969Q0 106 aaKnown RBP10.52□□□□□ -0.72
USP40-208ENST00000450966 LY6G6EA0A0G2JKS1 128 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms