RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ZNF705DP0CH99 300 aaPredicted RBP8.92□□□□□ -0.98
PTPRF-208ENST00000437607 ZNF705BP0CI00 300 aaPredicted RBP8.92□□□□□ -0.98
PTPRF-208ENST00000437607 HLA-DRB4P13762 266 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 ZNF138P52744 262 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 DEFB1P60022 68 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 ERCC8Q13216 396 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 ACTL10Q5JWF8 245 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 C9orf47Q6ZRZ4 202 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 BAGE2Q86Y30 109 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 SMIM12Q96EX1 92 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 VGLL1Q99990 258 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 KLF12Q9Y4X4 402 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 HLA-DRB4X5D2U9 266 aa8.92□□□□□ -0.98
PTPRF-208ENST00000437607 TRBV20OR9-2A0A075B6H5 130 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 IGLV2-11P01706 119 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 CT45A10P0DMU9 189 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 MGST1P10620 155 aaKnown RBP8.91□□□□□ -0.98
PTPRF-208ENST00000437607 PNRC1Q12796 327 aaPredicted RBP8.91□□□□□ -0.98
PTPRF-208ENST00000437607 ADIRFQ15847 76 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 GDF5OSQ5U4N7 250 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 APRG1Q8IVJ8 170 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 STHQ8IWL8 128 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 OR4B1Q8NGF8 309 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 LINC00477Q96M19 166 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 OVOL2Q9BRP0 275 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 ZFP30Q9Y2G7 519 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 CARHSP1Q9Y2V2 147 aaKnown RBP8.91□□□□□ -0.98
PTPRF-208ENST00000437607 LENEPQ9Y5L5 61 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 LY96Q9Y6Y9 160 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 DNAH2Q9P225 4427 aa8.91□□□□□ -0.98
PTPRF-208ENST00000437607 APOC3P02656 99 aa8.9□□□□□ -0.98
PTPRF-208ENST00000437607 LEPP41159 167 aa8.9□□□□□ -0.98
PTPRF-208ENST00000437607 TMEM241Q24JQ0 296 aa8.9□□□□□ -0.98
PTPRF-208ENST00000437607 SAPCD1Q5SSQ6 148 aa8.9□□□□□ -0.98
PTPRF-208ENST00000437607 NHLRC2Q8NBF2 726 aa8.9□□□□□ -0.98
PTPRF-208ENST00000437607 ODF3Q96PU9 254 aa8.9□□□□□ -0.98
PTPRF-208ENST00000437607 AGPAT4-IT1Q9H0P7 198 aa8.9□□□□□ -0.98
PTPRF-208ENST00000437607 BIN3Q9NQY0 253 aa8.9□□□□□ -0.98
PTPRF-208ENST00000437607 ZNF492Q9P255 531 aa8.9□□□□□ -0.98
PTPRF-208ENST00000437607 FAT2Q9NYQ8 4349 aa8.9□□□□□ -0.98
PTPRF-208ENST00000437607 PGPEP1LA6NFU8 196 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 H3BMM0 161 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 M0R036 132 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 IGKV3-20P01619 116 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 S100A1P23297 94 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 TSPOP30536 169 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 ZNF124Q15973 351 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 PRR27Q6MZM9 219 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 LINC01551Q86U37 167 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 TMEM183AQ8IXX5 376 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 SVBPQ8N300 66 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 TVP23CQ96ET8 276 aa8.89□□□□□ -0.99
PTPRF-208ENST00000437607 TRBV7-9A0A0J9YWB2 115 aa8.88□□□□□ -0.99
PTPRF-208ENST00000437607 SMUG1Q53HV7 270 aa8.88□□□□□ -0.99
PTPRF-208ENST00000437607 C10orf91Q5T1B1 145 aa8.88□□□□□ -0.99
PTPRF-208ENST00000437607 SDF2L1Q9HCN8 221 aa8.88□□□□□ -0.99
PTPRF-208ENST00000437607 A8MTW9 85 aa8.87□□□□□ -0.99
PTPRF-208ENST00000437607 J3KRW8 73 aa8.87□□□□□ -0.99
PTPRF-208ENST00000437607 SNAPINO95295 136 aa8.87□□□□□ -0.99
PTPRF-208ENST00000437607 LY6G6CO95867 125 aa8.87□□□□□ -0.99
PTPRF-208ENST00000437607 NUTF2P61970 127 aaKnown RBP8.87□□□□□ -0.99
PTPRF-208ENST00000437607 RPL23P62829 140 aaKnown RBP8.87□□□□□ -0.99
PTPRF-208ENST00000437607 TRPT1Q86TN4 253 aaKnown RBP8.87□□□□□ -0.99
PTPRF-208ENST00000437607 C8orf49Q96NF6 230 aa8.87□□□□□ -0.99
PTPRF-208ENST00000437607 PCLOQ9Y6V0 5065 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 LOC102724200A0A096LPH7 203 aaPredicted RBP8.86□□□□□ -0.99
PTPRF-208ENST00000437607 A0A0J9YWU9 116 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 K7EN84 100 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 GCGP01275 180 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 IGLV2-8P01709 118 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 AMBPP02760 352 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 CRISP2P16562 243 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 CDKN1BP46527 198 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 SPINK13Q1W4C9 94 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 ISOC2Q96AB3 205 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 DAZAP1Q96EP5 407 aaKnown RBP8.86□□□□□ -0.99
PTPRF-208ENST00000437607 ZC2HC1AQ96GY0 325 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 CLUHP3Q96NS8 147 aa8.86□□□□□ -0.99
PTPRF-208ENST00000437607 KIAA1109Q2LD37 5005 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 M0R2Z0 102 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 GPX1P07203 203 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 RHEBQ15382 184 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 FAM162BQ5T6X4 162 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 AMTNQ6UX39 209 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 ZFAND2AQ8N6M9 145 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 C15orf54Q8N8G6 183 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 OCC1Q8TAD7 63 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 FAM19A4Q96LR4 140 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 MLST8Q9BVC4 326 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 PKHD1P08F94 4074 aa8.85□□□□□ -0.99
PTPRF-208ENST00000437607 C7orf71A4D174 169 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 CXorf65A6NEN9 183 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 KLLNB2CW77 178 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 B4DEV8 164 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 SH2D1AO60880 128 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 INSP01308 110 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 RPL35AP18077 110 aaKnown RBP8.84□□□□□ -0.99
PTPRF-208ENST00000437607 FXYD7P58549 80 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 ERVFC1-1P60608 527 aa8.84□□□□□ -0.99
PTPRF-208ENST00000437607 BTN1A1Q13410 526 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms