RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 HIVEP3Q5T1R4 2406 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 FBLL1A6NHQ2 334 aaKnown RBP7.56□□□□□ -1.2
SS18-203ENST00000415083 SMAD7O15105 426 aaKnown RBP7.56□□□□□ -1.2
SS18-203ENST00000415083 SPRY2O43597 315 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 CLEC3BP05452 202 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 TMEM11P17152 192 aa7.56□□□□□ -1.2
SS18-203ENST00000415083 TRAV26-2A0A0B4J265 109 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 CEACAM3P40198 252 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 NRACQ8N912 160 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 TMEM190Q8WZ59 177 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 C20orf173Q96LM9 149 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 A0A0G2JLM5 398 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 A1L4Q6 167 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 ZNF207O43670 478 aaKnown RBP7.55□□□□□ -1.2
SS18-203ENST00000415083 GOSR1O95249 250 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 DTX2Q86UW9 622 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 GPHB5Q86YW7 130 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 TNFRSF6BO95407 300 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 DEFB1P60022 68 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 C1orf122Q6ZSJ8 110 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 AKAP6Q13023 2319 aa7.55□□□□□ -1.2
SS18-203ENST00000415083 K7ERJ3 54 aa7.54□□□□□ -1.2
SS18-203ENST00000415083 C19orf54Q5BKX5 351 aa7.54□□□□□ -1.2
SS18-203ENST00000415083 FAM110DQ8TAY7 271 aaPredicted RBP7.54□□□□□ -1.2
SS18-203ENST00000415083 C9orf118A6NHY6 69 aa7.54□□□□□ -1.2
SS18-203ENST00000415083 ORM1P02763 201 aa7.54□□□□□ -1.2
SS18-203ENST00000415083 ECSCRQ19T08 205 aa7.54□□□□□ -1.2
SS18-203ENST00000415083 OR1N2Q8NGR9 330 aa7.54□□□□□ -1.2
SS18-203ENST00000415083 U3KQE9 123 aa7.54□□□□□ -1.2
SS18-203ENST00000415083 RNF223E7ERA6 249 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 GCSHP23434 173 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 RPS20P60866 119 aaKnown RBP7.53□□□□□ -1.2
SS18-203ENST00000415083 SEC11AP67812 179 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 OR2K2Q8NGT1 345 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 LEPP41159 167 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 CLEC19AQ6UXS0 136 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 COL6A6A6NMZ7 2263 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 FABP5P3A8MUU1 101 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 SAA4P35542 130 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 GTF2H5Q6ZYL4 71 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 MAPKAPK5-AS1Q8N8E1 139 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 PIFOQ8TCI5 191 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 PHLDA1Q8WV24 401 aaPredicted RBP7.53□□□□□ -1.2
SS18-203ENST00000415083 SPCS1Q9Y6A9 102 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 CFAP46Q8IYW2 2715 aa7.53□□□□□ -1.2
SS18-203ENST00000415083 ZNF469Q96JG9 3925 aaPredicted RBP7.52□□□□□ -1.2
SS18-203ENST00000415083 A6NDN8 102 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 TRBV12-3P01733 135 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 FXYD2P54710 66 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 LMO4P61968 165 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 RPL24P83731 157 aaKnown RBP7.52□□□□□ -1.21
SS18-203ENST00000415083 MINOS1Q5TGZ0 78 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 MINOS1-NBL1R4GNA1 71 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 FCER1GP30273 86 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 TMEM158Q8WZ71 300 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 MUC4Q99102 2169 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 H3BRM9 83 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 BMI1P35226 326 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 C8orf86Q6ZUL3 223 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 LINC00527Q9UJ94 153 aa7.52□□□□□ -1.21
SS18-203ENST00000415083 CENPVL3A0A0U1RRI6 287 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 RBAKDNA6NC62 111 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 K7EP34 96 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 TIMD4Q96H15 378 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 RAXQ9Y2V3 346 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 OOSP1A8MZH6 123 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 PRSS1P07477 247 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 GTSCR1Q86UQ5 136 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 ITLN2Q8WWU7 325 aaPredicted RBP7.51□□□□□ -1.21
SS18-203ENST00000415083 CHD8Q9HCK8 2581 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 CUBNO60494 3623 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 SPTBN4Q9H254 2564 aa7.51□□□□□ -1.21
SS18-203ENST00000415083 AGRNO00468 2067 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 PRSS47A8MTI9 375 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 TMEM238C9JI98 176 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 HSD52Q0P140 79 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 CCDC144NLQ6NUI1 221 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 UNQ9165/PRO28630Q6UXU0 137 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 TMEM219Q86XT9 240 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 C5orf56Q8N8D9 126 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 SPOCK3Q9BQ16 436 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 ZANQ9Y493 2812 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 SIVA1O15304 175 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 UBE2E1P51965 193 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 MTURNQ8N3F0 131 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 A0A1W2PPM0 123 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 C19orf84I3L1E1 186 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 EDN2P20800 178 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 MAP1LC3AQ9H492 121 aa7.5□□□□□ -1.21
SS18-203ENST00000415083 G3V4G9 280 aa7.49□□□□□ -1.21
SS18-203ENST00000415083 SOCS3O14543 225 aa7.49□□□□□ -1.21
SS18-203ENST00000415083 EFNA4P52798 201 aa7.49□□□□□ -1.21
SS18-203ENST00000415083 C9orf47Q6ZRZ4 202 aa7.49□□□□□ -1.21
SS18-203ENST00000415083 Q8N8P6 123 aa7.49□□□□□ -1.21
SS18-203ENST00000415083 FBN2P35556 2912 aa7.49□□□□□ -1.21
SS18-203ENST00000415083 IGHV4-4A0A075B6R2 117 aa7.49□□□□□ -1.21
SS18-203ENST00000415083 SAMD5Q5TGI4 173 aa7.49□□□□□ -1.21
SS18-203ENST00000415083 OR9G4Q8NGQ1 327 aa7.49□□□□□ -1.21
SS18-203ENST00000415083 FLNCQ14315 2725 aa7.49□□□□□ -1.21
SS18-203ENST00000415083 TMEM8BA6NDV4 472 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms