RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 hADV29S1A0JD25 119 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 G3V4G9 280 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 OVOL3O00110 214 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 SAA4P35542 130 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 DEFB125Q8N687 156 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 ARFGEF3Q5TH69 2177 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 ARTNQ5T4W7 220 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 IL17RELQ6ZVW7 336 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 RNF183Q96D59 192 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 DIDO1Q9BTC0 2240 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 MRPL51Q4U2R6 128 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 Q6ZVH6 145 aa8.22□□□□□ -1.09
LIMCH1-203ENST00000396595 COL6A6A6NMZ7 2263 aa8.21□□□□□ -1.09
LIMCH1-203ENST00000396595 NSUN5P1Q3KNT7 163 aa8.21□□□□□ -1.09
LIMCH1-203ENST00000396595 C8orf49Q96NF6 230 aa8.21□□□□□ -1.09
LIMCH1-203ENST00000396595 LTBP1Q14766 1721 aa8.21□□□□□ -1.1
LIMCH1-203ENST00000396595 TRAV25A0A0B4J276 109 aa8.21□□□□□ -1.1
LIMCH1-203ENST00000396595 E7EQL1 145 aa8.21□□□□□ -1.1
LIMCH1-203ENST00000396595 LINC00311Q8N616 119 aa8.21□□□□□ -1.1
LIMCH1-203ENST00000396595 PLXNA3P51805 1871 aa8.21□□□□□ -1.1
LIMCH1-203ENST00000396595 DOCK8Q8NF50 2099 aa8.21□□□□□ -1.1
LIMCH1-203ENST00000396595 SS18Q15532 418 aa8.21□□□□□ -1.1
LIMCH1-203ENST00000396595 ZNRD1Q9P1U0 126 aa8.21□□□□□ -1.1
LIMCH1-203ENST00000396595 DOCK9Q9BZ29 2069 aa8.21□□□□□ -1.1
LIMCH1-203ENST00000396595 DOCK7Q96N67 2140 aa8.21□□□□□ -1.1
LIMCH1-203ENST00000396595 IL15RAQ13261 267 aa8.2□□□□□ -1.1
LIMCH1-203ENST00000396595 PRR25Q96S07 402 aa8.2□□□□□ -1.1
LIMCH1-203ENST00000396595 TCF20Q9UGU0 1960 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-203ENST00000396595 LY6DQ14210 128 aa8.2□□□□□ -1.1
LIMCH1-203ENST00000396595 SIGLEC8Q9NYZ4 499 aa8.2□□□□□ -1.1
LIMCH1-203ENST00000396595 C17orf58Q2M2W7 97 aa8.2□□□□□ -1.1
LIMCH1-203ENST00000396595 H3BRN7 92 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 ATP5G1P05496 136 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 UBE2E1P51965 193 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 Q6ZR03 302 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 NBASA2RRP1 2371 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 ABCA4P78363 2273 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 ATP6V0E1O15342 81 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 UBE2E2Q96LR5 201 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 VWA8A3KMH1 1905 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 KIR2DL5BA0A0G2JN68 375 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 KIR2DL5BA0A0G2JPC4 375 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 DEFB131AP59861 70 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 WDR86Q86TI4 376 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 KIR2DL5AQ8N109 375 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 MPLKIPQ8TAP9 179 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 USF3Q68DE3 2245 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 NDUFC2-KCTD14E9PQ53 114 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 I3L3M4 83 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 RPL35AP18077 110 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 MP68P56378 58 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 KLHL30-AS1Q8NEE0 82 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 SSC4DQ8WTU2 575 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 RNF166Q96A37 237 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 BPESC1Q9GZL8 116 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 ZSWIM8A7E2V4 1837 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 ZNF407Q9C0G0 2248 aa8.19□□□□□ -1.1
LIMCH1-203ENST00000396595 DKK1O94907 266 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 HEATR5AQ86XA9 2040 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 WT1-ASQ06250 92 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 MSRB2Q9Y3D2 182 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 YLPM1P49750 1951 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 F8VRH5 84 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 C15orf65H3BRN8 121 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 BAALC-AS2P0C853 105 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 THAP8Q8NA92 274 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 TRAV13-2A0A0B4J235 113 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 IGKV3D-7A0A0C4DH55 119 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 SDHAF1A6NFY7 115 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 C22orf46C9J442 243 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 IGLV3-1P01715 115 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 LY6HO94772 140 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 HLA-DRB4P13762 266 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 RSPO1Q2MKA7 263 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 SMIM2Q9BVW6 85 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 HLA-DRB4X5D2U9 266 aa8.18□□□□□ -1.1
LIMCH1-203ENST00000396595 K7EM74 188 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 NDUFS5O43920 106 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 PROK2Q9HC23 129 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 LOXP28300 417 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 CXCL5P42830 114 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 PRR20EP86478 221 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 PRR20CP86479 221 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 PRR20DP86480 221 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 PRR20BP86481 221 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 PRR20AP86496 221 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 FXYD5Q96DB9 178 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 MRPL35Q9NZE8 188 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 FOXI1Q12951 378 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 GPR179Q6PRD1 2367 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 CFC1BP0CG36 223 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 CFC1P0CG37 223 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 TEN1Q86WV5 123 aa8.17□□□□□ -1.1
LIMCH1-203ENST00000396595 SHANK1Q9Y566 2161 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 TEX36Q5VZQ5 186 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 PYGO2Q9BRQ0 406 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 IGHV1OR15-1A0A075B7D0 117 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 IGLL5B9A064 214 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 IGLC1P0CG04 106 aa8.16□□□□□ -1.1
LIMCH1-203ENST00000396595 WISP1O95388 367 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms