RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 BVES-AS1Q5T3Y7 98 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 SHISA9B4DS77 424 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 CLPSL2Q6UWE3 100 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 PRSS57Q6UWY2 283 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 ANKRD29Q8N6D5 301 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 VOPP1Q96AW1 172 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 SIGLEC8Q9NYZ4 499 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 HELZP42694 1942 aaKnown RBP10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 TEX48A0A1B0GUV7 120 aa10.19□□□□□ -0.78
CCDC88C-204ENST00000389857 K7EP34 96 aa10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 A0A096LPF7 62 aa10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 J3QQQ9 107 aa10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 Q71RC1 249 aaPredicted RBP10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 CRIPAKQ8N1N5 446 aa10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 ORMDL1Q9P0S3 153 aa10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 VWA8A3KMH1 1905 aa10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 TCF20Q9UGU0 1960 aaKnown RBP10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 HEATR5AQ86XA9 2040 aa10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 K7EMI3 77 aa10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 CYYR1Q96J86 154 aa10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 V9GYV3 84 aa10.18□□□□□ -0.78
CCDC88C-204ENST00000389857 IGKV1OR2-108A0A075B7D4 117 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 CRYGCP07315 174 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 HERV-K104P63124 156 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 DEFB105AQ8NG35 78 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 PRR30Q53SZ7 412 aaPredicted RBP10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 SIVA1O15304 175 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 IGFL3Q6UXB1 125 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 TINCRA0A1B0GVN0 87 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 A0A1W2PPM0 123 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 J3QKU1 62 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 CHKB-CPT1BH3BT56 60 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 K7EM74 188 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 ZC2HC1AQ96GY0 325 aa10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 MRPL35Q9NZE8 188 aaKnown RBP10.17□□□□□ -0.78
CCDC88C-204ENST00000389857 IGKV1-6A0A0C4DH72 117 aa10.16□□□□□ -0.78
CCDC88C-204ENST00000389857 XCL1P47992 114 aa10.16□□□□□ -0.78
CCDC88C-204ENST00000389857 RPL18AQ02543 176 aaKnown RBP10.16□□□□□ -0.78
CCDC88C-204ENST00000389857 NOP10Q9NPE3 64 aaKnown RBP10.16□□□□□ -0.78
CCDC88C-204ENST00000389857 SLC25A29Q8N8R3 303 aa10.16□□□□□ -0.78
CCDC88C-204ENST00000389857 KLHDC3Q9BQ90 382 aa10.16□□□□□ -0.78
CCDC88C-204ENST00000389857 H3BQ85 93 aa10.16□□□□□ -0.78
CCDC88C-204ENST00000389857 ADCYAP1P18509 176 aa10.16□□□□□ -0.78
CCDC88C-204ENST00000389857 FUSP35637 526 aaKnown RBP eCLIP10.16□□□□□ -0.78
CCDC88C-204ENST00000389857 NACAE9PAV3 2078 aa10.15□□□□□ -0.78
CCDC88C-204ENST00000389857 RBAKDNA6NC62 111 aa10.15□□□□□ -0.78
CCDC88C-204ENST00000389857 LOXP28300 417 aaPredicted RBP10.15□□□□□ -0.78
CCDC88C-204ENST00000389857 BUB3O43684 328 aa10.15□□□□□ -0.78
CCDC88C-204ENST00000389857 IGLC2P0DOY2 106 aa10.15□□□□□ -0.78
CCDC88C-204ENST00000389857 IGLC3P0DOY3 106 aa10.15□□□□□ -0.78
CCDC88C-204ENST00000389857 ZNF493Q6ZR52 646 aa10.15□□□□□ -0.78
CCDC88C-204ENST00000389857 WDR81Q562E7 1941 aa10.15□□□□□ -0.79
CCDC88C-204ENST00000389857 ETDCA0A1B0GVM5 59 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 C9orf66Q5T8R8 295 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 LINC01545Q5VT33 79 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 CITED1Q99966 193 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 SH2D6Q7Z4S9 175 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 C1orf43Q9BWL3 253 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 HOXB4P17483 251 aaPredicted RBP10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 RBM3P98179 157 aaKnown RBP10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 FXYD5Q96DB9 178 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 U3KQE9 123 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 ARFGEF3Q5TH69 2177 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 A0A1B0GUS0 222 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 RNF152Q8N8N0 203 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 ZNF503Q96F45 646 aa10.14□□□□□ -0.79
CCDC88C-204ENST00000389857 K7EP13 123 aa10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 CCL24O00175 119 aa10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 NPYP01303 97 aa10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 C15orf53Q8NAA6 179 aa10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 CADP27708 2225 aa10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 VPREB3Q9UKI3 123 aa10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 RNASE13Q5GAN3 156 aaKnown RBP10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 PRSS47A8MTI9 375 aa10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 FAM120AOSQ5T036 256 aa10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 DOCK10Q96BY6 2186 aa10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 PLXNA4Q9HCM2 1894 aa10.13□□□□□ -0.79
CCDC88C-204ENST00000389857 A0A0J9YY99 117 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 TIRAPP58753 221 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 CHD3Q12873 2000 aaKnown RBP10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 LTAP01374 205 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 C16orf74Q96GX8 76 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 IGHG2P01859 326 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 NDUFS7O75251 213 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 BAALC-AS2P0C853 105 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 ACYP1P07311 99 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 Q6ZQT7 251 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 Q6ZR03 302 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 ICOSQ9Y6W8 199 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 CRYBA4P53673 196 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 Q6ZWC4 215 aa10.12□□□□□ -0.79
CCDC88C-204ENST00000389857 IGLV3-9A0A075B6K5 115 aa10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 WT1-ASQ06250 92 aa10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 MAJINQ3KP22 176 aa10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 Q9HAA7 133 aa10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 EP300Q09472 2414 aaPredicted RBP10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 C15orf65H3BRN8 121 aa10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 TPSG1Q9NRR2 321 aa10.11□□□□□ -0.79
CCDC88C-204ENST00000389857 NDUFB1O75438 58 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms