RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 IGHV2-70P01814 119 aa12.4□□□□□ -0.42
NUCKS1-201ENST00000367142 EGR2P11161 476 aaPredicted RBP12.4□□□□□ -0.42
NUCKS1-201ENST00000367142 HERV-K104P63124 156 aa12.4□□□□□ -0.42
NUCKS1-201ENST00000367142 LGALS9BQ3B8N2 356 aa12.4□□□□□ -0.42
NUCKS1-201ENST00000367142 LGALS9CQ6DKI2 356 aa12.4□□□□□ -0.42
NUCKS1-201ENST00000367142 SPTA1P02549 2419 aa12.4□□□□□ -0.42
NUCKS1-201ENST00000367142 GYPEP15421 78 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 C8orf31Q8N9H6 132 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 ORMDL1Q9P0S3 153 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 SMIM27A0A1W2PRY6 76 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 IGHV3-30P01768 117 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 IGHV3-33P01772 117 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 IGHV3-30-3P0DP02 117 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 IGHV3-30-5P0DP03 117 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 SIGLEC8Q9NYZ4 499 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 SHISA9B4DS77 424 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 K7EQD1 137 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 NDUFB1O75438 58 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 NYNRINQ9P2P1 1898 aaKnown RBP12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 F8VRH5 84 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 SLURP1P55000 103 aa12.39□□□□□ -0.43
NUCKS1-201ENST00000367142 RP1P56715 2156 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 RBAKDNA6NC62 111 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 PIP4P1Q86T03 277 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 CYYR1Q96J86 154 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 TM2D2Q9BX73 214 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 IGKV2-29A2NJV5 120 aaPredicted RBP12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 NPYP01303 97 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 UBE2AP49459 152 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 DIAPH2-AS1Q14236 149 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 APRG1Q8IVJ8 170 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 ATP6V0E2Q8NHE4 81 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 PROK2Q9HC23 129 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 Q6ZWC4 215 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 MRPL35Q9NZE8 188 aaKnown RBP12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 TRPM7Q96QT4 1865 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 ZNF318Q5VUA4 2279 aa12.38□□□□□ -0.43
NUCKS1-201ENST00000367142 A8MWP6 167 aa12.37□□□□□ -0.43
NUCKS1-201ENST00000367142 TIMM17AQ99595 171 aa12.37□□□□□ -0.43
NUCKS1-201ENST00000367142 ZNF493Q6ZR52 646 aa12.37□□□□□ -0.43
NUCKS1-201ENST00000367142 GNRH2O43555 120 aa12.37□□□□□ -0.43
NUCKS1-201ENST00000367142 TRACP01848 142 aa12.36□□□□□ -0.43
NUCKS1-201ENST00000367142 F6UB75 175 aa12.36□□□□□ -0.43
NUCKS1-201ENST00000367142 C9orf118A6NHY6 69 aa12.36□□□□□ -0.43
NUCKS1-201ENST00000367142 CEND1Q8N111 149 aa12.36□□□□□ -0.43
NUCKS1-201ENST00000367142 WIPF2Q8TF74 440 aaPredicted RBP12.36□□□□□ -0.43
NUCKS1-201ENST00000367142 FXYD5Q96DB9 178 aa12.36□□□□□ -0.43
NUCKS1-201ENST00000367142 IGHV4-4A0A075B6R2 117 aa12.36□□□□□ -0.43
NUCKS1-201ENST00000367142 IL17DQ8TAD2 202 aa12.36□□□□□ -0.43
NUCKS1-201ENST00000367142 TRAV4A0A0B4J268 109 aa12.36□□□□□ -0.43
NUCKS1-201ENST00000367142 ZNF491Q8N8L2 437 aa12.35□□□□□ -0.43
NUCKS1-201ENST00000367142 Q9H8V8 135 aa12.35□□□□□ -0.43
NUCKS1-201ENST00000367142 V9GYV3 84 aa12.35□□□□□ -0.43
NUCKS1-201ENST00000367142 COX7A2LO14548 114 aa12.35□□□□□ -0.43
NUCKS1-201ENST00000367142 HLA-DMBP28068 263 aa12.35□□□□□ -0.43
NUCKS1-201ENST00000367142 GREB1LQ9C091 1923 aaPredicted RBP12.35□□□□□ -0.43
NUCKS1-201ENST00000367142 LENEPQ9Y5L5 61 aa12.35□□□□□ -0.43
NUCKS1-201ENST00000367142 ZNF503-AS2A6NEH8 195 aa12.35□□□□□ -0.43
NUCKS1-201ENST00000367142 K7EMI3 77 aa12.35□□□□□ -0.43
NUCKS1-201ENST00000367142 SLX1AQ9BQ83 275 aa12.35□□□□□ -0.43
NUCKS1-201ENST00000367142 CENPVL3A0A0U1RRI6 287 aa12.34□□□□□ -0.43
NUCKS1-201ENST00000367142 IGHV4-61A0A0C4DH41 118 aa12.34□□□□□ -0.43
NUCKS1-201ENST00000367142 F8W1H4 67 aa12.34□□□□□ -0.43
NUCKS1-201ENST00000367142 IGHV4-30-2A0A087WSY4 118 aa12.34□□□□□ -0.43
NUCKS1-201ENST00000367142 CLPSL1A2RUU4 121 aa12.34□□□□□ -0.43
NUCKS1-201ENST00000367142 DYNAPQ8N1N2 210 aa12.34□□□□□ -0.43
NUCKS1-201ENST00000367142 AHCTF1Q8WYP5 2266 aa12.34□□□□□ -0.43
NUCKS1-201ENST00000367142 PRB1P04280 392 aa12.34□□□□□ -0.43
NUCKS1-201ENST00000367142 C5orf38Q86SI9 138 aa12.34□□□□□ -0.43
NUCKS1-201ENST00000367142 LTAP01374 205 aa12.33□□□□□ -0.43
NUCKS1-201ENST00000367142 SPTBP11277 2137 aa12.33□□□□□ -0.44
NUCKS1-201ENST00000367142 NDUFS7O75251 213 aa12.33□□□□□ -0.44
NUCKS1-201ENST00000367142 DAZ2Q13117 558 aaKnown RBP12.33□□□□□ -0.44
NUCKS1-201ENST00000367142 DAZ4Q86SG3 579 aaKnown RBP12.33□□□□□ -0.44
NUCKS1-201ENST00000367142 FANCD2OSQ96PS1 177 aa12.33□□□□□ -0.44
NUCKS1-201ENST00000367142 DAZ3Q9NR90 486 aaKnown RBP12.33□□□□□ -0.44
NUCKS1-201ENST00000367142 COX8AP10176 69 aa12.33□□□□□ -0.44
NUCKS1-201ENST00000367142 IGHV4-38-2P0DP08 117 aa12.33□□□□□ -0.44
NUCKS1-201ENST00000367142 ZNF664Q8N3J9 261 aa12.33□□□□□ -0.44
NUCKS1-201ENST00000367142 POLR3KQ9Y2Y1 108 aaPredicted RBP12.32□□□□□ -0.44
NUCKS1-201ENST00000367142 FHL1Q13642 323 aa12.32□□□□□ -0.44
NUCKS1-201ENST00000367142 GRNP28799 593 aaKnown RBP12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 MYCNOSP40205 109 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 TMEM258P61165 79 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 PYY3Q5JQD4 70 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 RSPO3Q9BXY4 272 aaPredicted RBP12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 IGLV10-54A0A075B6I4 117 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 AGPAT4-IT1Q9H0P7 198 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 LCTP09848 1927 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 DOCK6Q96HP0 2047 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 ESPL1Q14674 2120 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 IFITM1P13164 125 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 ANKRD29Q8N6D5 301 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 SCN5AQ14524 2016 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 DOCK3Q8IZD9 2030 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 PRSS47A8MTI9 375 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 H3BQ85 93 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 C9orf47Q6ZRZ4 202 aa12.31□□□□□ -0.44
NUCKS1-201ENST00000367142 C20orf144Q9BQM9 153 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms