RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SMAD7O15105 426 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-203ENST00000359902 RNF185Q96GF1 192 aa15.91■□□□□ 0.14
CCDC88B-203ENST00000359902 USMG5Q96IX5 58 aa15.91■□□□□ 0.14
CCDC88B-203ENST00000359902 C16orf92Q96LL3 132 aa15.91■□□□□ 0.14
CCDC88B-203ENST00000359902 KLK15Q9H2R5 256 aa15.91■□□□□ 0.14
CCDC88B-203ENST00000359902 H3BUA1 57 aa15.91■□□□□ 0.14
CCDC88B-203ENST00000359902 NDUFA4O00483 81 aa15.91■□□□□ 0.14
CCDC88B-203ENST00000359902 AVPP01185 164 aa15.91■□□□□ 0.14
CCDC88B-203ENST00000359902 LINC01545Q5VT33 79 aa15.91■□□□□ 0.14
CCDC88B-203ENST00000359902 SPOCK3Q9BQ16 436 aa15.91■□□□□ 0.14
CCDC88B-203ENST00000359902 NPYP01303 97 aa15.9■□□□□ 0.14
CCDC88B-203ENST00000359902 USP9XQ93008 2570 aaPredicted RBP15.9■□□□□ 0.14
CCDC88B-203ENST00000359902 B4DSR2 109 aa15.89■□□□□ 0.13
CCDC88B-203ENST00000359902 NCR2O95944 276 aa15.89■□□□□ 0.13
CCDC88B-203ENST00000359902 IGHV3-11P01762 117 aa15.89■□□□□ 0.13
CCDC88B-203ENST00000359902 STPG4Q8N801 248 aa15.89■□□□□ 0.13
CCDC88B-203ENST00000359902 C20orf173Q96LM9 149 aa15.89■□□□□ 0.13
CCDC88B-203ENST00000359902 TFPI2P48307 235 aa15.89■□□□□ 0.13
CCDC88B-203ENST00000359902 GPHB5Q86YW7 130 aa15.89■□□□□ 0.13
CCDC88B-203ENST00000359902 NRGNQ92686 78 aa15.89■□□□□ 0.13
CCDC88B-203ENST00000359902 TCF21O43680 179 aa15.88■□□□□ 0.13
CCDC88B-203ENST00000359902 PF4V1P10720 104 aa15.88■□□□□ 0.13
CCDC88B-203ENST00000359902 PRSS57Q6UWY2 283 aa15.88■□□□□ 0.13
CCDC88B-203ENST00000359902 C9orf139Q6ZV77 190 aa15.88■□□□□ 0.13
CCDC88B-203ENST00000359902 PMCHL2Q9BQD1 86 aa15.88■□□□□ 0.13
CCDC88B-203ENST00000359902 Q6ZQT7 251 aa15.87■□□□□ 0.13
CCDC88B-203ENST00000359902 CELSR2Q9HCU4 2923 aa15.87■□□□□ 0.13
CCDC88B-203ENST00000359902 HSBP1L1C9JCN9 74 aa15.86■□□□□ 0.13
CCDC88B-203ENST00000359902 OR4X2Q8NGF9 303 aa15.86■□□□□ 0.13
CCDC88B-203ENST00000359902 MAP1AP78559 2803 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-203ENST00000359902 GAS8-AS1O95177 125 aa15.86■□□□□ 0.13
CCDC88B-203ENST00000359902 IGLV1-40P01703 118 aa15.86■□□□□ 0.13
CCDC88B-203ENST00000359902 PPBPP02775 128 aa15.86■□□□□ 0.13
CCDC88B-203ENST00000359902 FOXE3Q13461 319 aa15.86■□□□□ 0.13
CCDC88B-203ENST00000359902 LCNL1Q6ZST4 164 aa15.86■□□□□ 0.13
CCDC88B-203ENST00000359902 FXYD7P58549 80 aa15.85■□□□□ 0.13
CCDC88B-203ENST00000359902 ZNF738Q8NE65 137 aa15.85■□□□□ 0.13
CCDC88B-203ENST00000359902 TP73-AS1Q9UF72 201 aa15.85■□□□□ 0.13
CCDC88B-203ENST00000359902 SOCS3O14543 225 aa15.85■□□□□ 0.13
CCDC88B-203ENST00000359902 HINT1P49773 126 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-203ENST00000359902 DSCR9P59020 149 aa15.85■□□□□ 0.13
CCDC88B-203ENST00000359902 NPFFR1Q9GZQ6 430 aa15.85■□□□□ 0.13
CCDC88B-203ENST00000359902 IGHV7-4-1A0A0J9YVY3 117 aa15.84■□□□□ 0.13
CCDC88B-203ENST00000359902 OR8A1Q8NGG7 326 aa15.84■□□□□ 0.13
CCDC88B-203ENST00000359902 HBDP02042 147 aa15.84■□□□□ 0.13
CCDC88B-203ENST00000359902 PRR9Q5T870 116 aa15.84■□□□□ 0.13
CCDC88B-203ENST00000359902 MS4A6AQ9H2W1 248 aa15.84■□□□□ 0.13
CCDC88B-203ENST00000359902 LENEPQ9Y5L5 61 aa15.84■□□□□ 0.13
CCDC88B-203ENST00000359902 CFHR3Q02985 330 aa15.83■□□□□ 0.12
CCDC88B-203ENST00000359902 SCRT2Q9NQ03 307 aa15.83■□□□□ 0.12
CCDC88B-203ENST00000359902 A0A0G2JLM5 398 aa15.83■□□□□ 0.12
CCDC88B-203ENST00000359902 GATA3P23771 443 aa15.83■□□□□ 0.12
CCDC88B-203ENST00000359902 LINC00477Q96M19 166 aa15.82■□□□□ 0.12
CCDC88B-203ENST00000359902 MAP1LC3AQ9H492 121 aa15.82■□□□□ 0.12
CCDC88B-203ENST00000359902 TNFRSF6BO95407 300 aa15.82■□□□□ 0.12
CCDC88B-203ENST00000359902 SLC25A34Q6PIV7 304 aa15.82■□□□□ 0.12
CCDC88B-203ENST00000359902 ORAOV1Q8WV07 137 aa15.82■□□□□ 0.12
CCDC88B-203ENST00000359902 UTP20O75691 2785 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-203ENST00000359902 CRYBG3Q68DQ2 2970 aa15.81■□□□□ 0.12
CCDC88B-203ENST00000359902 ACACBO00763 2458 aa15.81■□□□□ 0.12
CCDC88B-203ENST00000359902 LINC01546A6NGU7 62 aa15.81■□□□□ 0.12
CCDC88B-203ENST00000359902 EVI2AP22794 236 aa15.81■□□□□ 0.12
CCDC88B-203ENST00000359902 ANKRD39Q53RE8 183 aa15.81■□□□□ 0.12
CCDC88B-203ENST00000359902 OVOL1O14753 267 aa15.8■□□□□ 0.12
CCDC88B-203ENST00000359902 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.8■□□□□ 0.122e-7■□□□□ 9.7
CCDC88B-203ENST00000359902 GATA1P15976 413 aaPredicted RBP15.8■□□□□ 0.12
CCDC88B-203ENST00000359902 SLC25A16P16260 332 aa15.8■□□□□ 0.12
CCDC88B-203ENST00000359902 PTTG1IPP53801 180 aa15.8■□□□□ 0.12
CCDC88B-203ENST00000359902 TM4SF20Q53R12 229 aa15.8■□□□□ 0.12
CCDC88B-203ENST00000359902 ZFAND2AQ8N6M9 145 aa15.8■□□□□ 0.12
CCDC88B-203ENST00000359902 OR10J6PQ8NGY7 276 aa15.8■□□□□ 0.12
CCDC88B-203ENST00000359902 DEFB1P60022 68 aa15.79■□□□□ 0.12
CCDC88B-203ENST00000359902 RPL11P62913 178 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-203ENST00000359902 RHPN1-AS1Q9BWJ2 59 aa15.79■□□□□ 0.12
CCDC88B-203ENST00000359902 IGHV4-4A0A075B6R2 117 aa15.79■□□□□ 0.12
CCDC88B-203ENST00000359902 SNAI2O43623 268 aa15.79■□□□□ 0.12
CCDC88B-203ENST00000359902 LGALS9BQ3B8N2 356 aa15.79■□□□□ 0.12
CCDC88B-203ENST00000359902 LGALS9CQ6DKI2 356 aa15.79■□□□□ 0.12
CCDC88B-203ENST00000359902 DEFB112Q30KQ8 113 aa15.78■□□□□ 0.12
CCDC88B-203ENST00000359902 TMEM95Q3KNT9 176 aa15.78■□□□□ 0.12
CCDC88B-203ENST00000359902 LINC01356Q8N9X3 169 aa15.78■□□□□ 0.12
CCDC88B-203ENST00000359902 IGHV4-59P01825 116 aa15.78■□□□□ 0.12
CCDC88B-203ENST00000359902 IFI27L1Q96BM0 104 aa15.78■□□□□ 0.12
CCDC88B-203ENST00000359902 NXT2Q9NPJ8 142 aaKnown RBP15.78■□□□□ 0.12
CCDC88B-203ENST00000359902 A0A096LNT2 108 aa15.77■□□□□ 0.12
CCDC88B-203ENST00000359902 J3KRW8 73 aa15.77■□□□□ 0.12
CCDC88B-203ENST00000359902 PRB1P04280 392 aa15.77■□□□□ 0.12
CCDC88B-203ENST00000359902 DAZ1Q9NQZ3 744 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-203ENST00000359902 ZNF580Q9UK33 172 aa15.77■□□□□ 0.12
CCDC88B-203ENST00000359902 SMIM15Q7Z3B0 74 aa15.77■□□□□ 0.11
CCDC88B-203ENST00000359902 MYO18BQ8IUG5 2567 aa15.77■□□□□ 0.11
CCDC88B-203ENST00000359902 CSPG4Q6UVK1 2322 aa15.76■□□□□ 0.11
CCDC88B-203ENST00000359902 IGKV3-7A0A075B6H7 116 aa15.76■□□□□ 0.11
CCDC88B-203ENST00000359902 CACNG7P62955 275 aa15.76■□□□□ 0.11
CCDC88B-203ENST00000359902 SPANXN1Q5VSR9 72 aa15.76■□□□□ 0.11
CCDC88B-203ENST00000359902 PEF1Q9UBV8 284 aaKnown RBP15.76■□□□□ 0.11
CCDC88B-203ENST00000359902 SMPXQ9UHP9 88 aa15.76■□□□□ 0.11
CCDC88B-203ENST00000359902 H3BVH4 76 aa15.76■□□□□ 0.11
CCDC88B-203ENST00000359902 FAM19A4Q96LR4 140 aa15.76■□□□□ 0.11
CCDC88B-203ENST00000359902 F6UB75 175 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms