RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TRGV1A0A0A0MS02 117 aa12.81□□□□□ -0.36
CLN3-202ENST00000355477 A0A0J9YY99 117 aa12.81□□□□□ -0.36
CLN3-202ENST00000355477 RNF222A6NCQ9 220 aa12.81□□□□□ -0.36
CLN3-202ENST00000355477 SPINK4O60575 86 aa12.81□□□□□ -0.36
CLN3-202ENST00000355477 CDC34P49427 236 aaPredicted RBP12.81□□□□□ -0.36
CLN3-202ENST00000355477 TCL1AP56279 114 aa12.81□□□□□ -0.36
CLN3-202ENST00000355477 INO80EQ8NBZ0 244 aaPredicted RBP12.81□□□□□ -0.36
CLN3-202ENST00000355477 OR2T35Q8NGX2 323 aa12.81□□□□□ -0.36
CLN3-202ENST00000355477 TNFSF18Q9UNG2 199 aa12.81□□□□□ -0.36
CLN3-202ENST00000355477 PKD1P98161 4303 aa12.8□□□□□ -0.36
CLN3-202ENST00000355477 FXYD6-FXYD2A0A087WZ82 144 aa12.8□□□□□ -0.36
CLN3-202ENST00000355477 G3V3Q6 166 aa12.8□□□□□ -0.36
CLN3-202ENST00000355477 STAG3L2P0CL84 134 aa12.8□□□□□ -0.36
CLN3-202ENST00000355477 STAG3L3P0CL85 134 aa12.8□□□□□ -0.36
CLN3-202ENST00000355477 FAM3BP58499 235 aaPredicted RBP12.8□□□□□ -0.36
CLN3-202ENST00000355477 IBA57Q5T440 356 aaKnown RBP12.8□□□□□ -0.36
CLN3-202ENST00000355477 RPL7L1Q6DKI1 246 aaKnown RBP12.8□□□□□ -0.36
CLN3-202ENST00000355477 LINC00336Q6ZUF6 198 aa12.8□□□□□ -0.36
CLN3-202ENST00000355477 GOLT1AQ6ZVE7 132 aa12.8□□□□□ -0.36
CLN3-202ENST00000355477 CMTM2Q8TAZ6 248 aa12.8□□□□□ -0.36
CLN3-202ENST00000355477 RAB24Q969Q5 203 aa12.8□□□□□ -0.36
CLN3-202ENST00000355477 GNPNAT1Q96EK6 184 aaPredicted RBP12.8□□□□□ -0.36
CLN3-202ENST00000355477 LINC00588Q9Y4M8 146 aa12.8□□□□□ -0.36
CLN3-202ENST00000355477 TRGV2A0A075B6R0 118 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 GNG5P63218 68 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 SERF2P84101 59 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 FAM74A1Q5RGS3 127 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 MUC21Q5SSG8 566 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 ZNRF2Q8NHG8 242 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 SUN5Q8TC36 379 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 TMED6Q8WW62 240 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 TVP23CQ96ET8 276 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 C18orf15Q96N68 181 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 LENEPQ9Y5L5 61 aa12.79□□□□□ -0.36
CLN3-202ENST00000355477 PKHD1P08F94 4074 aa12.78□□□□□ -0.36
CLN3-202ENST00000355477 TRAV8-1A0A0A6YYK1 113 aa12.78□□□□□ -0.36
CLN3-202ENST00000355477 Q6AWC8 147 aa12.78□□□□□ -0.36
CLN3-202ENST00000355477 SSX7Q7RTT5 188 aa12.78□□□□□ -0.36
CLN3-202ENST00000355477 ARL6IP6Q8N6S5 226 aa12.78□□□□□ -0.36
CLN3-202ENST00000355477 A0A1B0GVY2 172 aa12.77□□□□□ -0.37
CLN3-202ENST00000355477 MBP02144 154 aa12.77□□□□□ -0.37
CLN3-202ENST00000355477 GCHFRP30047 84 aa12.77□□□□□ -0.37
CLN3-202ENST00000355477 CCL18P55774 89 aa12.77□□□□□ -0.37
CLN3-202ENST00000355477 VSIG2Q96IQ7 327 aa12.77□□□□□ -0.37
CLN3-202ENST00000355477 ARPC5LQ9BPX5 153 aa12.77□□□□□ -0.37
CLN3-202ENST00000355477 MRPL16Q9NX20 251 aaKnown RBP12.77□□□□□ -0.37
CLN3-202ENST00000355477 MDFICQ9P1T7 246 aa12.77□□□□□ -0.37
CLN3-202ENST00000355477 PRSS29PA6NIE9 313 aa12.76□□□□□ -0.37
CLN3-202ENST00000355477 ST6GAL2Q96JF0 529 aa12.76□□□□□ -0.37
CLN3-202ENST00000355477 SGK494Q96LW2 274 aa12.76□□□□□ -0.37
CLN3-202ENST00000355477 H3BNG1 76 aa12.75□□□□□ -0.37
CLN3-202ENST00000355477 ACTR3CQ9C0K3 210 aaPredicted RBP12.75□□□□□ -0.37
CLN3-202ENST00000355477 BORCS7-ASMTA0A0B4J1R7 106 aa12.74□□□□□ -0.37
CLN3-202ENST00000355477 IGHV3-53P01767 116 aa12.74□□□□□ -0.37
CLN3-202ENST00000355477 ZNF415Q09FC8 603 aa12.74□□□□□ -0.37
CLN3-202ENST00000355477 ZNF726P1Q15940 193 aa12.74□□□□□ -0.37
CLN3-202ENST00000355477 TMEM183BQ1AE95 376 aa12.74□□□□□ -0.37
CLN3-202ENST00000355477 ESRGQ1W209 222 aa12.74□□□□□ -0.37
CLN3-202ENST00000355477 FAM159AQ6UWV7 190 aa12.74□□□□□ -0.37
CLN3-202ENST00000355477 TMEM183AQ8IXX5 376 aa12.74□□□□□ -0.37
CLN3-202ENST00000355477 TREM1Q9NP99 234 aa12.74□□□□□ -0.37
CLN3-202ENST00000355477 NBDYA0A0U1RRE5 68 aa12.73□□□□□ -0.37
CLN3-202ENST00000355477 F6UZH7 168 aa12.73□□□□□ -0.37
CLN3-202ENST00000355477 SMLR1H3BR10 107 aa12.73□□□□□ -0.37
CLN3-202ENST00000355477 CXorf1O96002 111 aa12.73□□□□□ -0.37
CLN3-202ENST00000355477 SUMO1P63165 101 aaKnown RBP12.73□□□□□ -0.37
CLN3-202ENST00000355477 C1orf134Q5TEV5 83 aa12.73□□□□□ -0.37
CLN3-202ENST00000355477 C5orf17Q8NAS9 161 aa12.73□□□□□ -0.37
CLN3-202ENST00000355477 NAGKQ9UJ70 344 aa12.73□□□□□ -0.37
CLN3-202ENST00000355477 GGTLC3B5MD39 225 aa12.72□□□□□ -0.37
CLN3-202ENST00000355477 ARPC5O15511 151 aa12.72□□□□□ -0.37
CLN3-202ENST00000355477 GNRH2O43555 120 aa12.72□□□□□ -0.37
CLN3-202ENST00000355477 TCRAP04437 139 aa12.72□□□□□ -0.37
CLN3-202ENST00000355477 TDRG1Q3Y452 100 aa12.72□□□□□ -0.37
CLN3-202ENST00000355477 CYTL1Q9NRR1 136 aa12.72□□□□□ -0.37
CLN3-202ENST00000355477 TMEM167BQ9NRX6 74 aa12.72□□□□□ -0.37
CLN3-202ENST00000355477 A0A096LPF7 62 aa12.71□□□□□ -0.37
CLN3-202ENST00000355477 FHL2Q14192 279 aa12.71□□□□□ -0.37
CLN3-202ENST00000355477 Q9H8V8 135 aa12.71□□□□□ -0.37
CLN3-202ENST00000355477 EPDR1Q9UM22 224 aa12.71□□□□□ -0.37
CLN3-202ENST00000355477 TRGV11A0A075B6L2 103 aa12.7□□□□□ -0.38
CLN3-202ENST00000355477 TRAV21A0A0B4J279 112 aa12.7□□□□□ -0.38
CLN3-202ENST00000355477 IGLV2-11P01706 119 aa12.7□□□□□ -0.38
CLN3-202ENST00000355477 ZNF80P51504 273 aaPredicted RBP12.7□□□□□ -0.38
CLN3-202ENST00000355477 C8orf49Q96NF6 230 aa12.7□□□□□ -0.38
CLN3-202ENST00000355477 IGHV3-16A0A0C4DH30 117 aa12.69□□□□□ -0.38
CLN3-202ENST00000355477 CTXND1A0A1B0GTU2 59 aa12.69□□□□□ -0.38
CLN3-202ENST00000355477 SERTM2A0A1B0GWG4 89 aa12.69□□□□□ -0.38
CLN3-202ENST00000355477 TAAR5O14804 337 aa12.69□□□□□ -0.38
CLN3-202ENST00000355477 PAX4O43316 350 aa12.69□□□□□ -0.38
CLN3-202ENST00000355477 SOHLH1Q5JUK2 328 aa12.69□□□□□ -0.38
CLN3-202ENST00000355477 IQCF2Q8IXL9 164 aa12.69□□□□□ -0.38
CLN3-202ENST00000355477 RASL10AQ92737 203 aa12.69□□□□□ -0.38
CLN3-202ENST00000355477 SPXQ9BT56 116 aa12.69□□□□□ -0.38
CLN3-202ENST00000355477 PSG8Q9UQ74 426 aa12.69□□□□□ -0.38
CLN3-202ENST00000355477 TYMSP04818 313 aa12.68□□□□□ -0.38
CLN3-202ENST00000355477 SFTA3P0C7M3 94 aa12.68□□□□□ -0.38
CLN3-202ENST00000355477 CRYBA4P53673 196 aa12.68□□□□□ -0.38
CLN3-202ENST00000355477 FGF8P55075 233 aaPredicted RBP12.68□□□□□ -0.38
CLN3-202ENST00000355477 ZNF479Q96JC4 524 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 124.1 ms