RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 BRI3O95415 125 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 XGP55808 180 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 NDUFA1O15239 70 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 ICMTO60725 284 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 WISP2O76076 250 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 CRYBB3P26998 211 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 WDR81Q562E7 1941 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 WISP3O95389 354 aaPredicted RBP6.49□□□□□ -1.37
HMGB1-203ENST00000341423 FABP4P15090 132 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 KIAA2026Q5HYC2 2103 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 Q8N7P7 452 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 TMEM263Q8WUH6 116 aaKnown RBP6.49□□□□□ -1.37
HMGB1-203ENST00000341423 RNF126Q9BV68 326 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 SNHG12Q9BXW3 62 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 HSPB8Q9UJY1 196 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 FAM210AQ96ND0 272 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 COL4A4P53420 1690 aaPredicted RBP6.49□□□□□ -1.37
HMGB1-203ENST00000341423 A6NDN8 102 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 CDSNQ15517 529 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 NHP2Q9NX24 153 aaKnown RBP6.49□□□□□ -1.37
HMGB1-203ENST00000341423 MSRB1Q9NZV6 116 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 CLDN16Q9Y5I7 305 aa6.49□□□□□ -1.37
HMGB1-203ENST00000341423 MUC21A0A0G2JKD1 596 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 MUC21A0A140T8X8 626 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 PNRC1Q12796 327 aaPredicted RBP6.48□□□□□ -1.37
HMGB1-203ENST00000341423 ARL6IP6Q8N6S5 226 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 MAP6D1Q9H9H5 199 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 VAX2Q9UIW0 290 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 XCL1P47992 114 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 MED12LQ86YW9 2145 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 DYSFO75923 2080 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 IGLV10-54A0A075B6I4 117 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 TFF3Q07654 80 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 IGHV4-4A0A075B6R2 117 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 HIST1H3AP68431 136 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 PDE6HQ13956 83 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 NPBQ8NG41 125 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 RETNQ9HD89 108 aa6.48□□□□□ -1.37
HMGB1-203ENST00000341423 GCHFRP30047 84 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 LYPD1Q8N2G4 141 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 DUSP21Q9H596 190 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 ITPR3Q14573 2671 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 UPK1BO75841 260 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 Q6P435 159 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 ADAMTS20P59510 1910 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 A0A0U1RRA0 63 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 FSTL3O95633 263 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 JOSD1Q15040 202 aaPredicted RBP6.47□□□□□ -1.37
HMGB1-203ENST00000341423 HSPB9Q9BQS6 159 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 TRBV5-7A0A0A0MS05 114 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 A0A1B0GW15 77 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 H7C2G1 150 aa6.47□□□□□ -1.37
HMGB1-203ENST00000341423 LGALS9O00182 355 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 PROK1P58294 105 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 SPCS2Q15005 226 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 PRR13Q9NZ81 148 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 VWA8A3KMH1 1905 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 NUP210Q8TEM1 1887 aaPredicted RBP6.46□□□□□ -1.37
HMGB1-203ENST00000341423 A0A1B0GUT8 65 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 TMEM218A2RU14 115 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 IGFL4Q6B9Z1 124 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 ZNF705AQ6ZN79 300 aaPredicted RBP6.46□□□□□ -1.37
HMGB1-203ENST00000341423 C6orf223Q8N319 242 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 VSIG2Q96IQ7 327 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 TCEAL7Q9BRU2 100 aa6.46□□□□□ -1.37
HMGB1-203ENST00000341423 EDN2P20800 178 aa6.46□□□□□ -1.38
HMGB1-203ENST00000341423 ORMDL2Q53FV1 153 aa6.46□□□□□ -1.38
HMGB1-203ENST00000341423 TRAPPC1Q9Y5R8 145 aa6.46□□□□□ -1.38
HMGB1-203ENST00000341423 FHL3Q13643 280 aa6.46□□□□□ -1.38
HMGB1-203ENST00000341423 C17orf58Q2M2W7 97 aa6.46□□□□□ -1.38
HMGB1-203ENST00000341423 OR11H7Q8NGC8 314 aa6.46□□□□□ -1.38
HMGB1-203ENST00000341423 IGLV2-11P01706 119 aa6.46□□□□□ -1.38
HMGB1-203ENST00000341423 BATFQ16520 125 aa6.46□□□□□ -1.38
HMGB1-203ENST00000341423 ALKAL2Q6UX46 152 aa6.46□□□□□ -1.38
HMGB1-203ENST00000341423 IGKV1D-13A0A0B4J2D9 117 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 COX7A2LO14548 114 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 ZNF253O75346 499 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 IGKV1-13P0DP09 117 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 FAM74A3Q4VXF1 159 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 C1orf158Q8N1D5 194 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 SHANK2-AS3Q9BTD1 123 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 TMEM131Q92545 1883 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 ZNF114Q8NC26 417 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 C11orf87Q6NUJ2 197 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 EPM2AB3EWF7 344 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 LY6G6FQ5SQ64 297 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 Q6ZNX1 250 aa6.45□□□□□ -1.38
HMGB1-203ENST00000341423 ZNF706Q9Y5V0 76 aaPredicted RBP6.45□□□□□ -1.38
HMGB1-203ENST00000341423 OTX1P32242 354 aaPredicted RBP6.44□□□□□ -1.38
HMGB1-203ENST00000341423 ZNF134P52741 427 aa6.44□□□□□ -1.38
HMGB1-203ENST00000341423 PRIMA1Q86XR5 153 aa6.44□□□□□ -1.38
HMGB1-203ENST00000341423 LSM4Q9Y4Z0 139 aaKnown RBP6.44□□□□□ -1.38
HMGB1-203ENST00000341423 C14orf178Q8N769 122 aaPredicted RBP6.44□□□□□ -1.38
HMGB1-203ENST00000341423 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.44□□□□□ -1.38
HMGB1-203ENST00000341423 MPC2O95563 127 aa6.44□□□□□ -1.38
HMGB1-203ENST00000341423 SCGB1A1P11684 91 aa6.44□□□□□ -1.38
HMGB1-203ENST00000341423 RPL29P47914 159 aaKnown RBP6.44□□□□□ -1.38
HMGB1-203ENST00000341423 UBE2D2P62837 147 aa6.44□□□□□ -1.38
HMGB1-203ENST00000341423 SVBPQ8N300 66 aa6.44□□□□□ -1.38
HMGB1-203ENST00000341423 TP53TG1Q9Y2A0 90 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms