RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 C2orf82Q6UX34 121 aa12.2□□□□□ -0.46
SHH-201ENST00000297261 Q8TCH9 128 aa12.2□□□□□ -0.46
SHH-201ENST00000297261 TP53TG3Q9ULZ0 132 aa12.2□□□□□ -0.46
SHH-201ENST00000297261 IGKV1OR2-108A0A075B7D4 117 aa12.2□□□□□ -0.46
SHH-201ENST00000297261 NPFFO15130 113 aa12.2□□□□□ -0.46
SHH-201ENST00000297261 RBX1P62877 108 aa12.2□□□□□ -0.46
SHH-201ENST00000297261 CEND1Q8N111 149 aa12.2□□□□□ -0.46
SHH-201ENST00000297261 CCL19Q99731 98 aa12.2□□□□□ -0.46
SHH-201ENST00000297261 TOMM7Q9P0U1 55 aa12.2□□□□□ -0.46
SHH-201ENST00000297261 PTPN13Q12923 2485 aa12.2□□□□□ -0.46
SHH-201ENST00000297261 CSPG4Q6UVK1 2322 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 LINC01545Q5VT33 79 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 PRR25Q96S07 402 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 NPFFR1Q9GZQ6 430 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 CPAMD8Q8IZJ3 1885 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 FAM208BQ5VWN6 2430 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 C2orf70A6NJV1 201 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 COX6B1P14854 86 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 WFDC2Q14508 124 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 C5orf64Q2M2E5 130 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 BUB1B-PAK6H3BSN5 160 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 LTAP01374 205 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 C12orf74Q32Q52 190 aa12.19□□□□□ -0.46
SHH-201ENST00000297261 ACACBO00763 2458 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 PDE6HQ13956 83 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 POU2AF1Q16633 256 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 PPDPFLQ8WWR9 84 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 DPH3P1Q9H4G8 78 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 CD28P10747 220 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 ANXA2RQ3ZCQ2 193 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 PIMREGQ9BSJ6 248 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 NCKAP5O14513 1909 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 M0R2P5 195 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 UBE2L6O14933 153 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 PAX1P15863 534 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 C2orf66Q6UXQ4 117 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 GTSF1Q8WW33 167 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 IGF2BP2-AS1Q96M15 143 aa12.18□□□□□ -0.46
SHH-201ENST00000297261 PATE2Q6UY27 113 aa12.17□□□□□ -0.46
SHH-201ENST00000297261 TRBV25-1A0A075B6N4 114 aa12.17□□□□□ -0.46
SHH-201ENST00000297261 FXYD2P54710 66 aa12.17□□□□□ -0.46
SHH-201ENST00000297261 COPS9Q8WXC6 57 aa12.17□□□□□ -0.46
SHH-201ENST00000297261 PRADC1Q9BSG0 188 aa12.17□□□□□ -0.46
SHH-201ENST00000297261 SIVA1O15304 175 aa12.17□□□□□ -0.46
SHH-201ENST00000297261 ANKRD11Q6UB99 2663 aaPredicted RBP12.17□□□□□ -0.46
SHH-201ENST00000297261 SIGLEC15Q6ZMC9 328 aa12.17□□□□□ -0.46
SHH-201ENST00000297261 Q8N8P6 123 aa12.16□□□□□ -0.46
SHH-201ENST00000297261 FAM167A-AS1Q96KT0 104 aa12.16□□□□□ -0.46
SHH-201ENST00000297261 KLF12Q9Y4X4 402 aa12.16□□□□□ -0.46
SHH-201ENST00000297261 SPTBN4Q9H254 2564 aa12.16□□□□□ -0.46
SHH-201ENST00000297261 SHISA9B4DS77 424 aa12.16□□□□□ -0.46
SHH-201ENST00000297261 ZNF833PQ6ZTB9 187 aa12.16□□□□□ -0.46
SHH-201ENST00000297261 GATA1P15976 413 aaPredicted RBP12.16□□□□□ -0.46
SHH-201ENST00000297261 PAX8Q06710 450 aa12.16□□□□□ -0.46
SHH-201ENST00000297261 C22orf34Q6ZV56 151 aa12.16□□□□□ -0.46
SHH-201ENST00000297261 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.15□□□□□ -0.46
SHH-201ENST00000297261 TRBV7-9A0A0J9YWB2 115 aa12.15□□□□□ -0.46
SHH-201ENST00000297261 MYMXA0A1B0GTQ4 84 aa12.15□□□□□ -0.46
SHH-201ENST00000297261 TEX36Q5VZQ5 186 aa12.15□□□□□ -0.46
SHH-201ENST00000297261 DTX2Q86UW9 622 aa12.15□□□□□ -0.46
SHH-201ENST00000297261 RNF114Q9Y508 228 aa12.15□□□□□ -0.46
SHH-201ENST00000297261 TNRC6BQ9UPQ9 1833 aaKnown RBP12.15□□□□□ -0.46
SHH-201ENST00000297261 A0A087WWL8 130 aa12.15□□□□□ -0.46
SHH-201ENST00000297261 ZNF876PQ49A33 203 aa12.15□□□□□ -0.46
SHH-201ENST00000297261 IL17RELQ6ZVW7 336 aa12.15□□□□□ -0.47
SHH-201ENST00000297261 TRAV8-3A0A0A6YYJ7 113 aa12.14□□□□□ -0.47
SHH-201ENST00000297261 ATXN8Q156A1 80 aa12.14□□□□□ -0.47
SHH-201ENST00000297261 THAP8Q8NA92 274 aa12.14□□□□□ -0.47
SHH-201ENST00000297261 F8VRH5 84 aa12.14□□□□□ -0.47
SHH-201ENST00000297261 HLA-DRB4P13762 266 aa12.14□□□□□ -0.47
SHH-201ENST00000297261 HLA-DRB4X5D2U9 266 aa12.14□□□□□ -0.47
SHH-201ENST00000297261 NAV3Q8IVL0 2385 aa12.14□□□□□ -0.47
SHH-201ENST00000297261 B5MCH6 92 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 LHBP01229 141 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 SPATA12Q7Z6I5 190 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 TMEM190Q8WZ59 177 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 EYSQ5T1H1 3165 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 TANC2Q9HCD6 1990 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 VCYO14598 125 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 CTRLP40313 264 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 NEGR1Q7Z3B1 354 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 SPXQ9BT56 116 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 DUX5Q96PT3 197 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 RNF5Q99942 180 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 DUX3Q96PT4 197 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 MSRB1Q9NZV6 116 aa12.13□□□□□ -0.47
SHH-201ENST00000297261 HLA-DMBP28068 263 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 LOXP28300 417 aaPredicted RBP12.12□□□□□ -0.47
SHH-201ENST00000297261 TMEM219Q86XT9 240 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 SORL1Q92673 2214 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 TRBV20-1A0A075B6N2 111 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 IGHV3-73A0A0B4J1V6 119 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 IGLL5B9A064 214 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 EGR2P11161 476 aaPredicted RBP12.12□□□□□ -0.47
SHH-201ENST00000297261 BRWD1-AS2P59051 145 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 TP53TG1Q9Y2A0 90 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 RRN3P1Q2M238 152 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 GDF5OSQ5U4N7 250 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 TMEM14CQ9P0S9 112 aa12.12□□□□□ -0.47
SHH-201ENST00000297261 OVOL1O14753 267 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms