RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 TENM1Q9UKZ4 2725 aa10.57□□□□□ -0.72
SS18-201ENST00000269137 A0A1W2PPQ1 181 aa10.56□□□□□ -0.72
SS18-201ENST00000269137 ZNF688P0C7X2 276 aa10.56□□□□□ -0.72
SS18-201ENST00000269137 FAM162BQ5T6X4 162 aa10.56□□□□□ -0.72
SS18-201ENST00000269137 TRBV7-9A0A0J9YWB2 115 aa10.56□□□□□ -0.72
SS18-201ENST00000269137 TYMSP04818 313 aa10.56□□□□□ -0.72
SS18-201ENST00000269137 ZNF705DP0CH99 300 aaPredicted RBP10.56□□□□□ -0.72
SS18-201ENST00000269137 ZNF705BP0CI00 300 aaPredicted RBP10.56□□□□□ -0.72
SS18-201ENST00000269137 SMIM6P0DI80 62 aa10.56□□□□□ -0.72
SS18-201ENST00000269137 CD300EQ496F6 205 aaPredicted RBP10.56□□□□□ -0.72
SS18-201ENST00000269137 PSMG4Q5JS54 123 aa10.56□□□□□ -0.72
SS18-201ENST00000269137 TSKUQ8WUA8 353 aa10.56□□□□□ -0.72
SS18-201ENST00000269137 CITED1Q99966 193 aa10.56□□□□□ -0.72
SS18-201ENST00000269137 A8MWL6 223 aa10.55□□□□□ -0.72
SS18-201ENST00000269137 CA1P00915 261 aaPredicted RBP10.55□□□□□ -0.72
SS18-201ENST00000269137 DEFB1P60022 68 aa10.55□□□□□ -0.72
SS18-201ENST00000269137 HIST1H1AQ02539 215 aaPredicted RBP10.55□□□□□ -0.72
SS18-201ENST00000269137 SPAG8Q99932 426 aaPredicted RBP10.55□□□□□ -0.72
SS18-201ENST00000269137 FAM231BA6NCW3 169 aa10.54□□□□□ -0.72
SS18-201ENST00000269137 F6UB75 175 aa10.54□□□□□ -0.72
SS18-201ENST00000269137 SH2D1AO60880 128 aa10.54□□□□□ -0.72
SS18-201ENST00000269137 FAM19A4Q96LR4 140 aa10.54□□□□□ -0.72
SS18-201ENST00000269137 GFRA4Q9GZZ7 299 aa10.54□□□□□ -0.72
SS18-201ENST00000269137 FABP5P3A8MUU1 101 aa10.54□□□□□ -0.72
SS18-201ENST00000269137 ZNF80P51504 273 aaPredicted RBP10.54□□□□□ -0.72
SS18-201ENST00000269137 OR2D3Q8NGH3 330 aa10.54□□□□□ -0.72
SS18-201ENST00000269137 A0A0J9YX75 114 aa10.53□□□□□ -0.72
SS18-201ENST00000269137 OR4C46A6NHA9 309 aa10.53□□□□□ -0.72
SS18-201ENST00000269137 IFITM10A6NMD0 228 aa10.53□□□□□ -0.72
SS18-201ENST00000269137 LINC00482Q8N8I6 264 aa10.53□□□□□ -0.72
SS18-201ENST00000269137 NEU1Q99519 415 aa10.53□□□□□ -0.72
SS18-201ENST00000269137 PF4P02776 101 aa10.52□□□□□ -0.73
SS18-201ENST00000269137 CRISP2P16562 243 aa10.52□□□□□ -0.73
SS18-201ENST00000269137 TCL1AP56279 114 aa10.52□□□□□ -0.73
SS18-201ENST00000269137 RPL19P84098 196 aaKnown RBP10.52□□□□□ -0.73
SS18-201ENST00000269137 EBLN2Q6P2I7 272 aa10.52□□□□□ -0.73
SS18-201ENST00000269137 FOXI2Q6ZQN5 318 aa10.52□□□□□ -0.73
SS18-201ENST00000269137 APRG1Q8IVJ8 170 aa10.52□□□□□ -0.73
SS18-201ENST00000269137 ZFAND2AQ8N6M9 145 aa10.52□□□□□ -0.73
SS18-201ENST00000269137 ODF3Q96PU9 254 aa10.52□□□□□ -0.73
SS18-201ENST00000269137 NAT8BQ9UHF3 227 aa10.52□□□□□ -0.73
SS18-201ENST00000269137 ZNF256Q9Y2P7 627 aaPredicted RBP10.52□□□□□ -0.73
SS18-201ENST00000269137 IZUMO1RA6ND01 250 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 PCP4L1A6NKN8 68 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 FOXA3P55318 350 aaPredicted RBP10.51□□□□□ -0.73
SS18-201ENST00000269137 HIST3H2BBQ8N257 126 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 OR2K2Q8NGT1 345 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 HIGD1CA8MV81 97 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 SAP30O75446 220 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 DUSP14O95147 198 aaKnown RBP10.51□□□□□ -0.73
SS18-201ENST00000269137 IGLV1-51P01701 117 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 ACTL10Q5JWF8 245 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 GDF5OSQ5U4N7 250 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 NUP35Q8NFH5 326 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 GTSF1Q8WW33 167 aa10.51□□□□□ -0.73
SS18-201ENST00000269137 XKRY2A2RUG3 117 aa10.5□□□□□ -0.73
SS18-201ENST00000269137 TMEM189A5PLL7 270 aa10.5□□□□□ -0.73
SS18-201ENST00000269137 RPS20P60866 119 aaKnown RBP10.5□□□□□ -0.73
SS18-201ENST00000269137 KRTAP24-1Q3LI83 254 aa10.5□□□□□ -0.73
SS18-201ENST00000269137 GFI1BQ5VTD9 330 aa10.5□□□□□ -0.73
SS18-201ENST00000269137 DEFB131AP59861 70 aa10.49□□□□□ -0.73
SS18-201ENST00000269137 LINC01559Q495D7 138 aa10.49□□□□□ -0.73
SS18-201ENST00000269137 AGRNO00468 2067 aa10.49□□□□□ -0.73
SS18-201ENST00000269137 A8MTW9 85 aa10.49□□□□□ -0.73
SS18-201ENST00000269137 KLLNB2CW77 178 aa10.49□□□□□ -0.73
SS18-201ENST00000269137 CD33P20138 364 aa10.49□□□□□ -0.73
SS18-201ENST00000269137 S100A2P29034 98 aa10.49□□□□□ -0.73
SS18-201ENST00000269137 COX19Q49B96 90 aa10.49□□□□□ -0.73
SS18-201ENST00000269137 PRR9Q5T870 116 aa10.49□□□□□ -0.73
SS18-201ENST00000269137 MAP6D1Q9H9H5 199 aa10.49□□□□□ -0.73
SS18-201ENST00000269137 VWFP04275 2813 aa10.48□□□□□ -0.73
SS18-201ENST00000269137 ORM1P02763 201 aa10.48□□□□□ -0.73
SS18-201ENST00000269137 GPX1P07203 203 aa10.48□□□□□ -0.73
SS18-201ENST00000269137 GZMBP10144 247 aa10.48□□□□□ -0.73
SS18-201ENST00000269137 Q6AWC8 147 aa10.48□□□□□ -0.73
SS18-201ENST00000269137 RASL11AQ6T310 242 aa10.48□□□□□ -0.73
SS18-201ENST00000269137 ATP5L2Q7Z4Y8 100 aa10.48□□□□□ -0.73
SS18-201ENST00000269137 ZNF575Q86XF7 245 aa10.48□□□□□ -0.73
SS18-201ENST00000269137 TRAV21A0A0B4J279 112 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 HLA-DRB4P13762 266 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 LEPP41159 167 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 CMC4P56277 68 aaPredicted RBP10.47□□□□□ -0.73
SS18-201ENST00000269137 S100A12P80511 92 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 COA6Q5JTJ3 125 aaKnown RBP10.47□□□□□ -0.73
SS18-201ENST00000269137 PRIMA1Q86XR5 153 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 C11orf21Q9P2W6 132 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 HLA-DRB4X5D2U9 266 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 NOTCH3Q9UM47 2321 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 SPINK4O60575 86 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 TSPOP30536 169 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 PDZD11Q5EBL8 140 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 WDR73Q6P4I2 378 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 PGLYRP4Q96LB8 373 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 GNB1LQ9BYB4 327 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 NIT2Q9NQR4 276 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 TRAPPC1Q9Y5R8 145 aa10.47□□□□□ -0.73
SS18-201ENST00000269137 IGKV3D-20A0A0C4DH25 116 aa10.46□□□□□ -0.74
SS18-201ENST00000269137 H3BMM0 161 aa10.46□□□□□ -0.74
SS18-201ENST00000269137 FRMD6-AS1P0C7T7 363 aa10.46□□□□□ -0.74
SS18-201ENST00000269137 RNASE4P34096 147 aaKnown RBP10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms