RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 CITED1Q99966 193 aa13.2□□□□□ -0.3
FOXA1-201ENST00000250448 SMAD7O15105 426 aaKnown RBP13.19□□□□□ -0.3
FOXA1-201ENST00000250448 CCDC168Q8NDH2 2452 aa13.19□□□□□ -0.3
FOXA1-201ENST00000250448 GAGE10A6NGK3 116 aa13.19□□□□□ -0.3
FOXA1-201ENST00000250448 H3BRM9 83 aa13.19□□□□□ -0.3
FOXA1-201ENST00000250448 FXYD7P58549 80 aa13.19□□□□□ -0.3
FOXA1-201ENST00000250448 HES1Q14469 280 aa13.19□□□□□ -0.3
FOXA1-201ENST00000250448 K7ERU9 68 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 PAX8Q06710 450 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 HSD52Q0P140 79 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 KLF17Q5JT82 389 aaPredicted RBP13.18□□□□□ -0.3
FOXA1-201ENST00000250448 OR9G4Q8NGQ1 327 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 AP1S3Q96PC3 154 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 C9orf118A6NHY6 69 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 TCTAP57738 103 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 HERV-K104P63124 156 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 JMJD8Q96S16 334 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 THYN1Q9P016 225 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 IGKV2-40A0A087WW87 121 aaPredicted RBP13.18□□□□□ -0.3
FOXA1-201ENST00000250448 NBR2O15453 112 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 IGKV2D-40P01614 121 aaPredicted RBP13.18□□□□□ -0.3
FOXA1-201ENST00000250448 RAB9AP51151 201 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 UFSP1Q6NVU6 142 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 CFHR4Q92496 578 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 IFI27L1Q96BM0 104 aa13.18□□□□□ -0.3
FOXA1-201ENST00000250448 SMKR1H3BMG3 65 aa13.17□□□□□ -0.3
FOXA1-201ENST00000250448 NPYP01303 97 aa13.17□□□□□ -0.3
FOXA1-201ENST00000250448 GTF2H5Q6ZYL4 71 aa13.17□□□□□ -0.3
FOXA1-201ENST00000250448 PGPEP1Q9NXJ5 209 aa13.17□□□□□ -0.3
FOXA1-201ENST00000250448 COX8CQ7Z4L0 72 aa13.16□□□□□ -0.3
FOXA1-201ENST00000250448 J3QKU1 62 aa13.16□□□□□ -0.3
FOXA1-201ENST00000250448 CKS2P33552 79 aa13.16□□□□□ -0.3
FOXA1-201ENST00000250448 KIR3DS1Q14943 382 aa13.16□□□□□ -0.3
FOXA1-201ENST00000250448 SIVA1O15304 175 aa13.15□□□□□ -0.3
FOXA1-201ENST00000250448 SAP30O75446 220 aa13.15□□□□□ -0.3
FOXA1-201ENST00000250448 SAA4P35542 130 aa13.15□□□□□ -0.3
FOXA1-201ENST00000250448 FER1L6-AS1Q8NA97 138 aa13.15□□□□□ -0.3
FOXA1-201ENST00000250448 OR4X2Q8NGF9 303 aa13.15□□□□□ -0.3
FOXA1-201ENST00000250448 PRR25Q96S07 402 aa13.15□□□□□ -0.3
FOXA1-201ENST00000250448 EGR2P11161 476 aaPredicted RBP13.15□□□□□ -0.3
FOXA1-201ENST00000250448 MFAP4P55083 255 aa13.15□□□□□ -0.3
FOXA1-201ENST00000250448 BRD3OSQ6XYD6 125 aa13.15□□□□□ -0.3
FOXA1-201ENST00000250448 ADAMTSL5Q6ZMM2 481 aa13.15□□□□□ -0.3
FOXA1-201ENST00000250448 ITPR2Q14571 2701 aa13.15□□□□□ -0.31
FOXA1-201ENST00000250448 H3BUT2 72 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 TWIST1Q15672 202 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 ATP6V0BQ99437 205 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 FASNP49327 2511 aaKnown RBP13.14□□□□□ -0.31
FOXA1-201ENST00000250448 IGLV11-55A0A075B6I3 123 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 K7EP34 96 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 FANCD2OSQ96PS1 177 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 CENPVL3A0A0U1RRI6 287 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 NDUFA3O95167 84 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 NPBQ8NG41 125 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 Q8TAT8 98 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 AJUBAQ96IF1 538 aa13.14□□□□□ -0.31
FOXA1-201ENST00000250448 F8W735 103 aaPredicted RBP13.13□□□□□ -0.31
FOXA1-201ENST00000250448 IGLC6P0CF74 106 aa13.13□□□□□ -0.31
FOXA1-201ENST00000250448 NMUP48645 174 aa13.13□□□□□ -0.31
FOXA1-201ENST00000250448 UBE2E1P51965 193 aa13.13□□□□□ -0.31
FOXA1-201ENST00000250448 PCP2Q8IVA1 136 aa13.13□□□□□ -0.31
FOXA1-201ENST00000250448 NAA38Q9BRA0 125 aaKnown RBP13.13□□□□□ -0.31
FOXA1-201ENST00000250448 CREBBPQ92793 2442 aa13.13□□□□□ -0.31
FOXA1-201ENST00000250448 TLN2Q9Y4G6 2542 aa13.13□□□□□ -0.31
FOXA1-201ENST00000250448 TRAV40A0A0B4J280 105 aa13.13□□□□□ -0.31
FOXA1-201ENST00000250448 A0A0G2JLM5 398 aa13.13□□□□□ -0.31
FOXA1-201ENST00000250448 RPL7P18124 248 aaKnown RBP13.13□□□□□ -0.31
FOXA1-201ENST00000250448 ZNF80P51504 273 aaPredicted RBP13.13□□□□□ -0.31
FOXA1-201ENST00000250448 HECTD1Q9ULT8 2610 aa13.12□□□□□ -0.31
FOXA1-201ENST00000250448 FBLL1A6NHQ2 334 aaKnown RBP13.12□□□□□ -0.31
FOXA1-201ENST00000250448 C5orf64Q2M2E5 130 aa13.12□□□□□ -0.31
FOXA1-201ENST00000250448 WFDC3Q8IUB2 231 aa13.12□□□□□ -0.31
FOXA1-201ENST00000250448 NPFFR1Q9GZQ6 430 aa13.12□□□□□ -0.31
FOXA1-201ENST00000250448 PRRC2AP48634 2157 aaKnown RBP13.12□□□□□ -0.31
FOXA1-201ENST00000250448 NCBP2LA6PVI3 153 aaKnown RBP13.12□□□□□ -0.31
FOXA1-201ENST00000250448 NPIPB5A8MRT5 1133 aa13.12□□□□□ -0.31
FOXA1-201ENST00000250448 DKK2Q9UBU2 259 aa13.12□□□□□ -0.31
FOXA1-201ENST00000250448 TEX15Q9BXT5 2789 aa13.11□□□□□ -0.31
FOXA1-201ENST00000250448 VGLL1Q99990 258 aa13.11□□□□□ -0.31
FOXA1-201ENST00000250448 C21orf62Q9NYP8 219 aa13.11□□□□□ -0.31
FOXA1-201ENST00000250448 IGHV4-38-2P0DP08 117 aa13.11□□□□□ -0.31
FOXA1-201ENST00000250448 MAP1LC3AQ9H492 121 aa13.11□□□□□ -0.31
FOXA1-201ENST00000250448 NPFFO15130 113 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 MSMBP08118 114 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 RAB37Q96AX2 223 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 RNF185Q96GF1 192 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 ZNF469Q96JG9 3925 aaPredicted RBP13.1□□□□□ -0.31
FOXA1-201ENST00000250448 RNF223E7ERA6 249 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 OR2K2Q8NGT1 345 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 C18orf15Q96N68 181 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 AVPP01185 164 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 IGHV3-23P01764 117 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 ID1P41134 155 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 MINOS1Q5TGZ0 78 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 ARPC1AQ92747 370 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 MINOS1-NBL1R4GNA1 71 aa13.1□□□□□ -0.31
FOXA1-201ENST00000250448 IGFL4Q6B9Z1 124 aa13.09□□□□□ -0.31
FOXA1-201ENST00000250448 SELENOKQ9Y6D0 94 aa13.09□□□□□ -0.31
FOXA1-201ENST00000250448 HLA-DMBP28068 263 aa13.09□□□□□ -0.31
FOXA1-201ENST00000250448 NDPQ00604 133 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 98.8 ms