RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 A8MWL6 223 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 INAFM1C9JVW0 142 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 GZMBP10144 247 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 RPL19P84098 196 aaKnown RBP13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 WDR73Q6P4I2 378 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 TEX29Q8N6K0 151 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 OR10D4PQ8NGN7 298 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 Q8TAT8 98 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 GLMPQ8WWB7 406 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 ZNF702PQ9H963 129 aa13.03□□□□□ -0.32
SHKBP1-216ENST00000598201 S100A2P29034 98 aa13.02□□□□□ -0.33
SHKBP1-216ENST00000598201 OR2D3Q8NGH3 330 aa13.02□□□□□ -0.33
SHKBP1-216ENST00000598201 DUX5Q96PT3 197 aa13.02□□□□□ -0.33
SHKBP1-216ENST00000598201 MT-ND6P03923 174 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 KIAA1644Q3SXP7 199 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 C8orf86Q6ZUL3 223 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 TMEM256Q8N2U0 113 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 WIPF2Q8TF74 440 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 SLC50A1Q9BRV3 221 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 COX19Q49B96 90 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 OR4B1Q8NGF8 309 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 PGLYRP4Q96LB8 373 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 PRR25Q96S07 402 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 NPFFR1Q9GZQ6 430 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 TP53TG3Q9ULZ0 132 aa13.01□□□□□ -0.33
SHKBP1-216ENST00000598201 TCAPO15273 167 aa13□□□□□ -0.33
SHKBP1-216ENST00000598201 NUPR1O60356 82 aa13□□□□□ -0.33
SHKBP1-216ENST00000598201 AMBPP02760 352 aa13□□□□□ -0.33
SHKBP1-216ENST00000598201 ERCC8Q13216 396 aa13□□□□□ -0.33
SHKBP1-216ENST00000598201 SIGLECL1Q8N7X8 197 aa13□□□□□ -0.33
SHKBP1-216ENST00000598201 PEF1Q9UBV8 284 aaKnown RBP13□□□□□ -0.33
SHKBP1-216ENST00000598201 A0A1B0GXF2 115 aa13□□□□□ -0.33
SHKBP1-216ENST00000598201 HLA-DQA1P01909 254 aa13□□□□□ -0.33
SHKBP1-216ENST00000598201 SLAQ13239 276 aa13□□□□□ -0.33
SHKBP1-216ENST00000598201 RASL11AQ6T310 242 aa13□□□□□ -0.33
SHKBP1-216ENST00000598201 GFRA4Q9GZZ7 299 aa13□□□□□ -0.33
SHKBP1-216ENST00000598201 TEP1Q99973 2627 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-216ENST00000598201 MTORP42345 2549 aa12.99□□□□□ -0.33
SHKBP1-216ENST00000598201 RPLP1P05386 114 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-216ENST00000598201 CRISP2P16562 243 aa12.99□□□□□ -0.33
SHKBP1-216ENST00000598201 PCP4P48539 62 aa12.99□□□□□ -0.33
SHKBP1-216ENST00000598201 CAMPP49913 170 aa12.99□□□□□ -0.33
SHKBP1-216ENST00000598201 TM4SF20Q53R12 229 aa12.99□□□□□ -0.33
SHKBP1-216ENST00000598201 PRR31Q5SQ13 230 aa12.99□□□□□ -0.33
SHKBP1-216ENST00000598201 F2Z2F3 143 aa12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 PKIAP61925 76 aa12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 PYY3Q5JQD4 70 aa12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 RBPMS2Q6ZRY4 209 aaKnown RBP12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 COX8CQ7Z4L0 72 aa12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 GPHB5Q86YW7 130 aa12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 PACRGQ96M98 296 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 TMEM89A2RUT3 159 aa12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 CT45A10P0DMU9 189 aa12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 EDN2P20800 178 aa12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 ZNF80P51504 273 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 LINC00310P59036 64 aa12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 SAPCD1Q5SSQ6 148 aa12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 SSBP4Q9BWG4 385 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 NSD1Q96L73 2696 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-216ENST00000598201 FAM231BA6NCW3 169 aa12.97□□□□□ -0.33
SHKBP1-216ENST00000598201 FBLL1A6NHQ2 334 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-216ENST00000598201 SH2D1AO60880 128 aa12.97□□□□□ -0.33
SHKBP1-216ENST00000598201 APCSP02743 223 aa12.97□□□□□ -0.33
SHKBP1-216ENST00000598201 DDTP30046 118 aa12.97□□□□□ -0.33
SHKBP1-216ENST00000598201 ATP5L2Q7Z4Y8 100 aa12.97□□□□□ -0.33
SHKBP1-216ENST00000598201 SELENOKQ9Y6D0 94 aa12.97□□□□□ -0.33
SHKBP1-216ENST00000598201 SRD5A1P18405 259 aa12.97□□□□□ -0.33
SHKBP1-216ENST00000598201 ANK3Q12955 4377 aaKnown RBP12.96□□□□□ -0.33
SHKBP1-216ENST00000598201 IGHV7-4-1A0A0J9YVY3 117 aa12.96□□□□□ -0.33
SHKBP1-216ENST00000598201 FAM162BQ5T6X4 162 aa12.96□□□□□ -0.33
SHKBP1-216ENST00000598201 C16orf92Q96LL3 132 aa12.96□□□□□ -0.33
SHKBP1-216ENST00000598201 C20orf173Q96LM9 149 aa12.96□□□□□ -0.33
SHKBP1-216ENST00000598201 FN1P02751 2386 aaKnown RBP12.96□□□□□ -0.34
SHKBP1-216ENST00000598201 RBAKDNA6NC62 111 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 TSTD3H0UI37 97 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 CRLF1O75462 422 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 SRIP30626 198 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 FOXA3P55318 350 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 HBBP68871 147 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 C21orf62-AS1Q17RA5 79 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 CDPF1Q6NVV7 123 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 RHPN1-AS1Q9BWJ2 59 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 AGPAT4-IT1Q9H0P7 198 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 DAZ1Q9NQZ3 744 aaKnown RBP12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 Q0VG73 95 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 FOXE3Q13461 319 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 MYOZ3Q8TDC0 251 aa12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 MRPL53Q96EL3 112 aaKnown RBP12.95□□□□□ -0.34
SHKBP1-216ENST00000598201 TMSB15BA0A087X1C1 80 aa12.94□□□□□ -0.34
SHKBP1-216ENST00000598201 A0A1W2PS18 150 aa12.94□□□□□ -0.34
SHKBP1-216ENST00000598201 SOCS3O14543 225 aa12.94□□□□□ -0.34
SHKBP1-216ENST00000598201 SERF1AO75920 110 aa12.94□□□□□ -0.34
SHKBP1-216ENST00000598201 NUTF2P61970 127 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-216ENST00000598201 FAM106AQ4KMX7 169 aa12.93□□□□□ -0.34
SHKBP1-216ENST00000598201 Q8N2B8 174 aa12.93□□□□□ -0.34
SHKBP1-216ENST00000598201 SMPXQ9UHP9 88 aa12.93□□□□□ -0.34
SHKBP1-216ENST00000598201 A8MWP6 167 aa12.93□□□□□ -0.34
SHKBP1-216ENST00000598201 ELANEP08246 267 aa12.93□□□□□ -0.34
SHKBP1-216ENST00000598201 SCGB2A2Q13296 93 aa12.93□□□□□ -0.34
SHKBP1-216ENST00000598201 BAGE3Q86Y29 109 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms