RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	ATP6V0C	P27449	155 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	LEP	P41159	167 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	TAS2R60	P59551	318 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	RAN	P62826	216 aa	Known RBP	6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	UBE2L3	P68036	154 aa	Known RBP	6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	GFI1B	Q5VTD9	330 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	PQLC2	Q6ZP29	291 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	C9orf47	Q6ZRZ4	202 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	LYPD1	Q8N2G4	141 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	OR2G3	Q8NGZ4	309 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	C20orf144	Q9BQM9	153 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	NIPSNAP3B	Q9BS92	247 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	PSMG3	Q9BT73	122 aa	Predicted RBP	6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	AGPAT4-IT1	Q9H0P7	198 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239		Q9H3A6	140 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	KMT2A	Q03164	3969 aa		6.56	□□□□□ -1.36
DNMT1-223	ENST00000591239	BORCS7-ASMT	A0A0B4J1R7	106 aa		6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239		H7BYZ3	331 aa		6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239	HMGB3	O15347	200 aa	Known RBP	6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239	CSN1S1	P47710	185 aa		6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239	TCTA	P57738	103 aa		6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239	SERF2	P84101	59 aa		6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239	TMEM78	Q5T7P6	136 aa		6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239	RPL7L1	Q6DKI1	246 aa	Known RBP	6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239	FAM19A4	Q96LR4	140 aa		6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239	VGLL1	Q99990	258 aa		6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239	SH3BGRL3	Q9H299	93 aa		6.55	□□□□□ -1.36
DNMT1-223	ENST00000591239	IGHV4-4	A0A075B6R2	117 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	TRAV12-3	A0A0B4J271	114 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	PLAC8L1	A1L4L8	177 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	LYRM9	A8MSI8	78 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	SMLR1	H3BR10	107 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	ARPC5	O15511	151 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	MB	P02144	154 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	SLC25A5	P05141	298 aa	Known RBP	6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	CDC34	P49427	236 aa	Predicted RBP	6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	DAD1	P61803	113 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	LGALS9C	Q6DKI2	356 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	ZNF493	Q6ZR52	646 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	RAB24	Q969Q5	203 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	GNPNAT1	Q96EK6	184 aa	Predicted RBP	6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	C16orf74	Q96GX8	76 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	APLN	Q9ULZ1	77 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	HYDIN	Q4G0P3	5121 aa		6.54	□□□□□ -1.36
DNMT1-223	ENST00000591239	C7orf71	A4D174	169 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	RBAKDN	A6NC62	111 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	PGP	A6NDG6	321 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	KLLN	B2CW77	178 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	TAAR5	O14804	337 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	NMB	P08949	121 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	STAG3L2	P0CL84	134 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	STAG3L3	P0CL85	134 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	ARL14EPL	P0DKL9	152 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	CRISP2	P16562	243 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	RNASE4	P34096	147 aa	Known RBP	6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	ZNF138	P52744	262 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	CD300C	Q08708	224 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	CCDC28A	Q8IWP9	274 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	RNASE8	Q8TDE3	154 aa	Known RBP	6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	RXFP4	Q8TDU9	374 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	TMEM263	Q8WUH6	116 aa	Known RBP	6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	HYLS1	Q96M11	299 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	PYGO2	Q9BRQ0	406 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	OTOR	Q9NRC9	128 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	ZNF492	Q9P255	531 aa		6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	6.53	□□□□□ -1.36
DNMT1-223	ENST00000591239	DIRC3	C9JPN6	131 aa		6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	ZNF324	O75467	553 aa	Predicted RBP	6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	GPX1	P07203	203 aa		6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	DEFB130B	P0DP73	79 aa		6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	DEFB130A	P0DP74	79 aa		6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	HTN3	P15516	51 aa		6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	BTN1A1	Q13410	526 aa		6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	FAM74A1	Q5RGS3	127 aa		6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	ZFAND2A	Q8N6M9	145 aa		6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239		Q8TAT8	98 aa		6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	CMTM2	Q8TAZ6	248 aa		6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	ACTR3C	Q9C0K3	210 aa	Predicted RBP	6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	NOP10	Q9NPE3	64 aa	Known RBP	6.52	□□□□□ -1.37
DNMT1-223	ENST00000591239	TRBV7-9	A0A0J9YWB2	115 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	HMSD	A8MTL9	139 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	CXorf1	O96002	111 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	GCHFR	P30047	84 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	PRR9	Q5T870	116 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	ARL6IP6	Q8N6S5	226 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	OR11H4	Q8NGC9	324 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	SUN5	Q8TC36	379 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	FAM210B	Q96KR6	192 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	NDUFAF3	Q9BU61	184 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	CYTL1	Q9NRR1	136 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	RPH3AL	Q9UNE2	315 aa		6.51	□□□□□ -1.37
DNMT1-223	ENST00000591239	CBY3	A6NI87	242 aa		6.5	□□□□□ -1.37
DNMT1-223	ENST00000591239	ZNF345	Q14585	488 aa		6.5	□□□□□ -1.37
DNMT1-223	ENST00000591239	ZNF726P1	Q15940	193 aa		6.5	□□□□□ -1.37
DNMT1-223	ENST00000591239	AKR1C8P	Q5T2L2	129 aa		6.5	□□□□□ -1.37
DNMT1-223	ENST00000591239		Q6ZQT7	251 aa		6.5	□□□□□ -1.37
DNMT1-223	ENST00000591239	GOLT1A	Q6ZVE7	132 aa		6.5	□□□□□ -1.37
DNMT1-223	ENST00000591239	SSX7	Q7RTT5	188 aa		6.5	□□□□□ -1.37
DNMT1-223	ENST00000591239	KCNRG	Q8N5I3	272 aa		6.5	□□□□□ -1.37
DNMT1-223	ENST00000591239	TMED6	Q8WW62	240 aa		6.5	□□□□□ -1.37

Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms