RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 HIST1H1EP10412 219 aaKnown RBP11.83□□□□□ -0.52
CLN3-216ENST00000565316 BTF3P20290 206 aaKnown RBP11.83□□□□□ -0.52
CLN3-216ENST00000565316 HBG1P69891 147 aa11.83□□□□□ -0.52
CLN3-216ENST00000565316 HBG2P69892 147 aa11.83□□□□□ -0.52
CLN3-216ENST00000565316 BAXQ07812 192 aa11.83□□□□□ -0.52
CLN3-216ENST00000565316 ERCC8Q13216 396 aa11.83□□□□□ -0.52
CLN3-216ENST00000565316 ATP6V1FQ16864 119 aa11.83□□□□□ -0.52
CLN3-216ENST00000565316 STX12Q86Y82 276 aa11.83□□□□□ -0.52
CLN3-216ENST00000565316 ZNF680Q8NEM1 530 aa11.83□□□□□ -0.52
CLN3-216ENST00000565316 H2AFB2P0C5Z0 115 aa11.82□□□□□ -0.52
CLN3-216ENST00000565316 S100A10P60903 97 aa11.82□□□□□ -0.52
CLN3-216ENST00000565316 RAB32Q13637 225 aa11.82□□□□□ -0.52
CLN3-216ENST00000565316 ANXA2RQ3ZCQ2 193 aa11.82□□□□□ -0.52
CLN3-216ENST00000565316 VSIG2Q96IQ7 327 aa11.82□□□□□ -0.52
CLN3-216ENST00000565316 AGPAT4-IT1Q9H0P7 198 aa11.82□□□□□ -0.52
CLN3-216ENST00000565316 GSN-AS1Q9NRJ2 163 aa11.82□□□□□ -0.52
CLN3-216ENST00000565316 MPDU1O75352 247 aa11.81□□□□□ -0.52
CLN3-216ENST00000565316 CRISP2P16562 243 aa11.81□□□□□ -0.52
CLN3-216ENST00000565316 FGF7P21781 194 aa11.81□□□□□ -0.52
CLN3-216ENST00000565316 CD300CQ08708 224 aa11.81□□□□□ -0.52
CLN3-216ENST00000565316 C9orf47Q6ZRZ4 202 aa11.81□□□□□ -0.52
CLN3-216ENST00000565316 EIF4E3Q8N5X7 224 aaKnown RBP11.81□□□□□ -0.52
CLN3-216ENST00000565316 A0A096LPF7 62 aa11.8□□□□□ -0.52
CLN3-216ENST00000565316 NMBP08949 121 aa11.8□□□□□ -0.52
CLN3-216ENST00000565316 PYYP10082 97 aa11.8□□□□□ -0.52
CLN3-216ENST00000565316 BTN1A1Q13410 526 aa11.8□□□□□ -0.52
CLN3-216ENST00000565316 SPATA12Q7Z6I5 190 aa11.8□□□□□ -0.52
CLN3-216ENST00000565316 CCDC32Q9BV29 185 aa11.8□□□□□ -0.52
CLN3-216ENST00000565316 NPCDR1Q9BY65 106 aa11.8□□□□□ -0.52
CLN3-216ENST00000565316 TIMM9Q9Y5J7 89 aa11.8□□□□□ -0.52
CLN3-216ENST00000565316 TRGV2A0A075B6R0 118 aa11.79□□□□□ -0.52
CLN3-216ENST00000565316 SPINK4O60575 86 aa11.79□□□□□ -0.52
CLN3-216ENST00000565316 RNASE4P34096 147 aaKnown RBP11.79□□□□□ -0.52
CLN3-216ENST00000565316 GCSAMLQ5JQS6 135 aa11.79□□□□□ -0.52
CLN3-216ENST00000565316 EXOC3-AS1Q8N2X6 119 aa11.79□□□□□ -0.52
CLN3-216ENST00000565316 FAM167A-AS1Q96KT0 104 aa11.79□□□□□ -0.52
CLN3-216ENST00000565316 SLC25A2Q9BXI2 301 aa11.79□□□□□ -0.52
CLN3-216ENST00000565316 GPN1Q9HCN4 374 aaPredicted RBP11.79□□□□□ -0.52
CLN3-216ENST00000565316 NDUFA13Q9P0J0 144 aa11.79□□□□□ -0.52
CLN3-216ENST00000565316 TRGV1A0A0A0MS02 117 aa11.78□□□□□ -0.52
CLN3-216ENST00000565316 TCL1AP56279 114 aa11.78□□□□□ -0.52
CLN3-216ENST00000565316 ZFAND2AQ8N6M9 145 aa11.78□□□□□ -0.52
CLN3-216ENST00000565316 MAPKAPK5-AS1Q8N8E1 139 aa11.78□□□□□ -0.52
CLN3-216ENST00000565316 BLNKQ8WV28 456 aa11.78□□□□□ -0.52
CLN3-216ENST00000565316 FUT9Q9Y231 359 aa11.78□□□□□ -0.52
CLN3-216ENST00000565316 KLF12Q9Y4X4 402 aa11.78□□□□□ -0.52
CLN3-216ENST00000565316 FAM240BA0A1B0GVZ2 78 aa11.77□□□□□ -0.53
CLN3-216ENST00000565316 ICAM4Q14773 271 aa11.77□□□□□ -0.53
CLN3-216ENST00000565316 IBA57Q5T440 356 aaKnown RBP11.77□□□□□ -0.53
CLN3-216ENST00000565316 VGLL1Q99990 258 aa11.77□□□□□ -0.53
CLN3-216ENST00000565316 AAMDCQ9H7C9 122 aa11.77□□□□□ -0.53
CLN3-216ENST00000565316 IGKV2-40A0A087WW87 121 aaPredicted RBP11.76□□□□□ -0.53
CLN3-216ENST00000565316 IGKV2D-40P01614 121 aaPredicted RBP11.76□□□□□ -0.53
CLN3-216ENST00000565316 GPX1P07203 203 aa11.76□□□□□ -0.53
CLN3-216ENST00000565316 KRTAP10-2P60368 255 aa11.76□□□□□ -0.53
CLN3-216ENST00000565316 NHLH2Q02577 135 aa11.76□□□□□ -0.53
CLN3-216ENST00000565316 PRR9Q5T870 116 aa11.76□□□□□ -0.53
CLN3-216ENST00000565316 MIR17HGQ75NE6 70 aa11.76□□□□□ -0.53
CLN3-216ENST00000565316 NBEAP1P0C6P0 100 aa11.75□□□□□ -0.53
CLN3-216ENST00000565316 TMEM78Q5T7P6 136 aa11.75□□□□□ -0.53
CLN3-216ENST00000565316 Q6ZRN7 208 aaPredicted RBP11.75□□□□□ -0.53
CLN3-216ENST00000565316 Q8N1X5 172 aa11.75□□□□□ -0.53
CLN3-216ENST00000565316 OR5C1Q8NGR4 320 aa11.75□□□□□ -0.53
CLN3-216ENST00000565316 ST6GAL2Q96JF0 529 aa11.75□□□□□ -0.53
CLN3-216ENST00000565316 ZNF492Q9P255 531 aa11.75□□□□□ -0.53
CLN3-216ENST00000565316 IGHV1OR15-1A0A075B7D0 117 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 TRBV7-9A0A0J9YWB2 115 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 ASAH1Q13510 395 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 MZT2BQ6NZ67 158 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 FAM122CQ6P4D5 195 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 Q6ZQT7 251 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 LINC00299Q6ZSB3 139 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 THAP6Q8TBB0 222 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 FXYD5Q96DB9 178 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 SLC25A31Q9H0C2 315 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 OR51M1Q9H341 326 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 TP53TG3Q9ULZ0 132 aa11.74□□□□□ -0.53
CLN3-216ENST00000565316 E5RGE8 158 aa11.73□□□□□ -0.53
CLN3-216ENST00000565316 RGS13O14921 159 aa11.73□□□□□ -0.53
CLN3-216ENST00000565316 ZNF138P52744 262 aa11.73□□□□□ -0.53
CLN3-216ENST00000565316 LINC00315P59091 139 aa11.73□□□□□ -0.53
CLN3-216ENST00000565316 MRPL32Q9BYC8 188 aaKnown RBP11.73□□□□□ -0.53
CLN3-216ENST00000565316 SIVA1O15304 175 aa11.72□□□□□ -0.53
CLN3-216ENST00000565316 PAX4O43316 350 aa11.72□□□□□ -0.53
CLN3-216ENST00000565316 SLAQ13239 276 aa11.72□□□□□ -0.53
CLN3-216ENST00000565316 PAXXQ9BUH6 204 aa11.72□□□□□ -0.53
CLN3-216ENST00000565316 NMES1Q9C002 83 aa11.72□□□□□ -0.53
CLN3-216ENST00000565316 KCNIP2Q9NS61 270 aa11.72□□□□□ -0.53
CLN3-216ENST00000565316 PRO0255Q9UI72 69 aa11.72□□□□□ -0.53
CLN3-216ENST00000565316 ICOSQ9Y6W8 199 aa11.72□□□□□ -0.53
CLN3-216ENST00000565316 H0YIZ8 118 aa11.71□□□□□ -0.53
CLN3-216ENST00000565316 NXPH4O95158 308 aa11.71□□□□□ -0.53
CLN3-216ENST00000565316 SIX6O95475 246 aa11.71□□□□□ -0.53
CLN3-216ENST00000565316 FHL2Q14192 279 aa11.71□□□□□ -0.53
CLN3-216ENST00000565316 PHYHIPLQ96FC7 376 aa11.71□□□□□ -0.53
CLN3-216ENST00000565316 WDR61Q9GZS3 305 aaKnown RBP11.71□□□□□ -0.53
CLN3-216ENST00000565316 MRPL16Q9NX20 251 aaKnown RBP11.71□□□□□ -0.53
CLN3-216ENST00000565316 OR5AC2Q9NZP5 309 aa11.71□□□□□ -0.53
CLN3-216ENST00000565316 RBAKDNA6NC62 111 aa11.7□□□□□ -0.54
CLN3-216ENST00000565316 OR10J4P0C629 311 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms