RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 KRTAP10-3P60369 221 aa16.06■□□□□ 0.16
CLN3-209ENST00000561689 LINC00322Q6ZN03 302 aaPredicted RBP16.06■□□□□ 0.16
CLN3-209ENST00000561689 MRPL53Q96EL3 112 aaKnown RBP16.06■□□□□ 0.16
CLN3-209ENST00000561689 OSTCQ9NRP0 149 aa16.06■□□□□ 0.16
CLN3-209ENST00000561689 PEMTQ9UBM1 199 aa16.06■□□□□ 0.16
CLN3-209ENST00000561689 ZFP30Q9Y2G7 519 aa16.06■□□□□ 0.16
CLN3-209ENST00000561689 V9GYV3 84 aa16.06■□□□□ 0.16
CLN3-209ENST00000561689 M0QZ24 198 aa16.05■□□□□ 0.16
CLN3-209ENST00000561689 TFPI2P48307 235 aa16.05■□□□□ 0.16
CLN3-209ENST00000561689 FHL3Q13643 280 aa16.05■□□□□ 0.16
CLN3-209ENST00000561689 ZNF738Q8NE65 137 aa16.05■□□□□ 0.16
CLN3-209ENST00000561689 MS4A6AQ9H2W1 248 aa16.05■□□□□ 0.16
CLN3-209ENST00000561689 FAM3BP58499 235 aaPredicted RBP16.04■□□□□ 0.16
CLN3-209ENST00000561689 CLEC5AQ9NY25 188 aa16.04■□□□□ 0.16
CLN3-209ENST00000561689 JMJD1CQ15652 2540 aa16.04■□□□□ 0.16
CLN3-209ENST00000561689 S100PP25815 95 aa16.04■□□□□ 0.16
CLN3-209ENST00000561689 NSUN5P1Q3KNT7 163 aa16.04■□□□□ 0.16
CLN3-209ENST00000561689 NUDT10Q8NFP7 164 aa16.04■□□□□ 0.16
CLN3-209ENST00000561689 DCANP1Q8TF63 244 aa16.04■□□□□ 0.16
CLN3-209ENST00000561689 NUDT11Q96G61 164 aa16.04■□□□□ 0.16
CLN3-209ENST00000561689 ZC2HC1AQ96GY0 325 aa16.04■□□□□ 0.16
CLN3-209ENST00000561689 C8orf49Q96NF6 230 aa16.04■□□□□ 0.16
CLN3-209ENST00000561689 ADARB2-AS1A8MUL3 147 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST1H2BKO60814 126 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST1H2BJP06899 126 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 ZNF705DP0CH99 300 aaPredicted RBP16.03■□□□□ 0.16
CLN3-209ENST00000561689 ZNF705BP0CI00 300 aaPredicted RBP16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST1H2BOP23527 126 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST1H2BBP33778 126 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST1H2BDP58876 126 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 DEFB1P60022 68 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST1H2BCP62807 126 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST2H2BEQ16778 126 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST1H2BHQ93079 126 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST1H2BNQ99877 126 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 HIST1H2BMQ99879 126 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 PYGO2Q9BRQ0 406 aa16.03■□□□□ 0.16
CLN3-209ENST00000561689 ZNF705GA8MUZ8 300 aaPredicted RBP16.02■□□□□ 0.16
CLN3-209ENST00000561689 PHOX2AO14813 284 aa16.02■□□□□ 0.16
CLN3-209ENST00000561689 CA1P00915 261 aaPredicted RBP16.02■□□□□ 0.16
CLN3-209ENST00000561689 CSN3P07498 182 aa16.02■□□□□ 0.16
CLN3-209ENST00000561689 RBAKDNA6NC62 111 aa16.02■□□□□ 0.15
CLN3-209ENST00000561689 FAM231DQ6ZW35 169 aa16.02■□□□□ 0.15
CLN3-209ENST00000561689 FRZBQ92765 325 aa16.02■□□□□ 0.15
CLN3-209ENST00000561689 GPR61Q9BZJ8 451 aa16.02■□□□□ 0.15
CLN3-209ENST00000561689 A0A1W2PPQ1 181 aa16.01■□□□□ 0.15
CLN3-209ENST00000561689 KCNIP4Q6PIL6 250 aa16.01■□□□□ 0.15
CLN3-209ENST00000561689 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.01■□□□□ 0.15
CLN3-209ENST00000561689 PRR25Q96S07 402 aa16.01■□□□□ 0.15
CLN3-209ENST00000561689 AGPAT4-IT1Q9H0P7 198 aa16.01■□□□□ 0.15
CLN3-209ENST00000561689 NDUFA6P56556 154 aa16■□□□□ 0.15
CLN3-209ENST00000561689 C12orf57Q99622 126 aa16■□□□□ 0.15
CLN3-209ENST00000561689 IL36BQ9NZH7 164 aa16■□□□□ 0.15
CLN3-209ENST00000561689 TEP1Q99973 2627 aaKnown RBP16■□□□□ 0.15
CLN3-209ENST00000561689 FBLL1A6NHQ2 334 aaKnown RBP16■□□□□ 0.15
CLN3-209ENST00000561689 GATCO43716 136 aaKnown RBP16■□□□□ 0.15
CLN3-209ENST00000561689 TRGC1P0CF51 173 aa16■□□□□ 0.15
CLN3-209ENST00000561689 SAPCD1Q5SSQ6 148 aa16■□□□□ 0.15
CLN3-209ENST00000561689 IMMP2LQ96T52 175 aa16■□□□□ 0.15
CLN3-209ENST00000561689 C19orf71A6NCJ1 209 aa15.99■□□□□ 0.15
CLN3-209ENST00000561689 ID1P41134 155 aa15.99■□□□□ 0.15
CLN3-209ENST00000561689 FOXL1Q12952 345 aa15.99■□□□□ 0.15
CLN3-209ENST00000561689 DAZAP1Q96EP5 407 aaKnown RBP15.99■□□□□ 0.15
CLN3-209ENST00000561689 ZNF492Q9P255 531 aa15.99■□□□□ 0.15
CLN3-209ENST00000561689 F6UB75 175 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 CRIP1P50238 77 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 TMEM78Q5T7P6 136 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 WNK1Q9H4A3 2382 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 A0A1B0GUS0 222 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 P01737 135 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 ZNF688P0C7X2 276 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 TCL1AP56279 114 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 SAMD13Q5VXD3 122 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 DYNLRB2Q8TF09 96 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 SRD5A3Q9H8P0 318 aa15.98■□□□□ 0.15
CLN3-209ENST00000561689 IFITM10A6NMD0 228 aa15.97■□□□□ 0.15
CLN3-209ENST00000561689 K7EQG2 157 aa15.97■□□□□ 0.15
CLN3-209ENST00000561689 OVOL1O14753 267 aa15.97■□□□□ 0.15
CLN3-209ENST00000561689 HOXA5P20719 270 aa15.97■□□□□ 0.15
CLN3-209ENST00000561689 C9orf47Q6ZRZ4 202 aa15.97■□□□□ 0.15
CLN3-209ENST00000561689 CT45A10P0DMU9 189 aa15.96■□□□□ 0.15
CLN3-209ENST00000561689 ZNF138P52744 262 aa15.96■□□□□ 0.15
CLN3-209ENST00000561689 NDFIP1Q9BT67 221 aa15.96■□□□□ 0.15
CLN3-209ENST00000561689 PSMG4Q5JS54 123 aa15.96■□□□□ 0.15
CLN3-209ENST00000561689 RBPMS2Q6ZRY4 209 aaKnown RBP15.96■□□□□ 0.15
CLN3-209ENST00000561689 NDUFA11Q86Y39 141 aa15.96■□□□□ 0.15
CLN3-209ENST00000561689 TMEM61Q8N0U2 210 aa15.96■□□□□ 0.15
CLN3-209ENST00000561689 OR10J6PQ8NGY7 276 aa15.96■□□□□ 0.15
CLN3-209ENST00000561689 RPP21Q9H633 154 aaKnown RBP15.96■□□□□ 0.15
CLN3-209ENST00000561689 PAFAH1B2P68402 229 aa15.95■□□□□ 0.14
CLN3-209ENST00000561689 HIST1H1AQ02539 215 aaPredicted RBP15.95■□□□□ 0.14
CLN3-209ENST00000561689 DEFB114Q30KQ6 69 aa15.95■□□□□ 0.14
CLN3-209ENST00000561689 GFI1BQ5VTD9 330 aa15.95■□□□□ 0.14
CLN3-209ENST00000561689 ZNF80P51504 273 aaPredicted RBP15.95■□□□□ 0.14
CLN3-209ENST00000561689 SNRPD3P62318 126 aaKnown RBP15.95■□□□□ 0.14
CLN3-209ENST00000561689 COX8CQ7Z4L0 72 aa15.95■□□□□ 0.14
CLN3-209ENST00000561689 OR8A1Q8NGG7 326 aa15.95■□□□□ 0.14
CLN3-209ENST00000561689 SMIM27A0A1W2PRY6 76 aa15.94■□□□□ 0.14
CLN3-209ENST00000561689 PCP4L1A6NKN8 68 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms