RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 AMTNQ6UX39 209 aa10.45□□□□□ -0.74
USP3-221ENST00000561442 PQLC2Q6ZP29 291 aa10.45□□□□□ -0.74
USP3-221ENST00000561442 CLUHP3Q96NS8 147 aa10.45□□□□□ -0.74
USP3-221ENST00000561442 AAMDCQ9H7C9 122 aa10.45□□□□□ -0.74
USP3-221ENST00000561442 PPP1R14DQ9NXH3 145 aa10.45□□□□□ -0.74
USP3-221ENST00000561442 RBFOX3A6NFN3 312 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 A8MTW9 85 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 M0R2Z0 102 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 IFNA1P01562 189 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 STAG3L2P0CL84 134 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 STAG3L3P0CL85 134 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 ZNF726P1Q15940 193 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 SPINK13Q1W4C9 94 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 ZNF506Q5JVG8 444 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 IQCF2Q8IXL9 164 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.44□□□□□ -0.74
USP3-221ENST00000561442 OR10J6PQ8NGY7 276 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 MRPL53Q96EL3 112 aaKnown RBP10.44□□□□□ -0.74
USP3-221ENST00000561442 WWC2-AS2Q96NR7 200 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 RARRES2Q99969 163 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 C1QTNF4Q9BXJ3 329 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 Q9H3A6 140 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 PRELID1Q9Y255 219 aa10.44□□□□□ -0.74
USP3-221ENST00000561442 LOC105371267A0A1B0GV96 52 aa10.43□□□□□ -0.74
USP3-221ENST00000561442 GCHFRP30047 84 aa10.43□□□□□ -0.74
USP3-221ENST00000561442 PPT1P50897 306 aa10.43□□□□□ -0.74
USP3-221ENST00000561442 CSNK1G2-AS1Q8NCQ2 148 aa10.43□□□□□ -0.74
USP3-221ENST00000561442 EDA2RQ9HAV5 297 aa10.43□□□□□ -0.74
USP3-221ENST00000561442 SMCO4Q9NRQ5 59 aa10.43□□□□□ -0.74
USP3-221ENST00000561442 IGHV3OR16-12A0A075B7B8 117 aa10.42□□□□□ -0.74
USP3-221ENST00000561442 IGKV2-40A0A087WW87 121 aaPredicted RBP10.42□□□□□ -0.74
USP3-221ENST00000561442 A0A0J9YWU9 116 aa10.42□□□□□ -0.74
USP3-221ENST00000561442 CTXND1A0A1B0GTU2 59 aa10.42□□□□□ -0.74
USP3-221ENST00000561442 IGKV2D-40P01614 121 aaPredicted RBP10.42□□□□□ -0.74
USP3-221ENST00000561442 FHITP49789 147 aa10.42□□□□□ -0.74
USP3-221ENST00000561442 ERCC8Q13216 396 aa10.42□□□□□ -0.74
USP3-221ENST00000561442 TRAV12-2A0A075B6T6 113 aa10.41□□□□□ -0.74
USP3-221ENST00000561442 DEFB4AO15263 64 aa10.41□□□□□ -0.74
USP3-221ENST00000561442 CXorf1O96002 111 aa10.41□□□□□ -0.74
USP3-221ENST00000561442 CT45A10P0DMU9 189 aa10.41□□□□□ -0.74
USP3-221ENST00000561442 FGF8P55075 233 aaPredicted RBP10.41□□□□□ -0.74
USP3-221ENST00000561442 SOHLH1Q5JUK2 328 aa10.41□□□□□ -0.74
USP3-221ENST00000561442 C15orf54Q8N8G6 183 aa10.41□□□□□ -0.74
USP3-221ENST00000561442 SFT2D1Q8WV19 159 aa10.41□□□□□ -0.74
USP3-221ENST00000561442 OTORQ9NRC9 128 aa10.41□□□□□ -0.74
USP3-221ENST00000561442 MAP1LC3B2A6NCE7 125 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 PGPA6NDG6 321 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 FAM74A7A6NL05 159 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 NPIPB6E9PJ23 425 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 J3KRW8 73 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 CSN1S1P47710 185 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 FLI1Q01543 452 aaPredicted RBP10.4□□□□□ -0.74
USP3-221ENST00000561442 FAM74A3Q4VXF1 159 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 LYPD1Q8N2G4 141 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 IGF2BP2-AS1Q96M15 143 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 VGLL1Q99990 258 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 MAP1LC3BQ9GZQ8 125 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 TMPRSS5Q9H3S3 457 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 RPH3ALQ9UNE2 315 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 X6R8D5 127 aa10.4□□□□□ -0.74
USP3-221ENST00000561442 LOC102723971A0A1B0GUV8 181 aa10.39□□□□□ -0.75
USP3-221ENST00000561442 B4DEV8 164 aa10.39□□□□□ -0.75
USP3-221ENST00000561442 C9JQL5 133 aa10.39□□□□□ -0.75
USP3-221ENST00000561442 CRXO43186 299 aaPredicted RBP10.39□□□□□ -0.75
USP3-221ENST00000561442 INSP01308 110 aa10.39□□□□□ -0.75
USP3-221ENST00000561442 AMBPP02760 352 aa10.39□□□□□ -0.75
USP3-221ENST00000561442 PNRC1Q12796 327 aaPredicted RBP10.39□□□□□ -0.75
USP3-221ENST00000561442 KIR3DS1Q14943 382 aa10.39□□□□□ -0.75
USP3-221ENST00000561442 C1orf158Q8N1D5 194 aa10.39□□□□□ -0.75
USP3-221ENST00000561442 AGPAT4-IT1Q9H0P7 198 aa10.39□□□□□ -0.75
USP3-221ENST00000561442 TMEM167BQ9NRX6 74 aa10.39□□□□□ -0.75
USP3-221ENST00000561442 GOLT1BQ9Y3E0 138 aa10.39□□□□□ -0.75
USP3-221ENST00000561442 A0A087WWC5 75 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 IGHV4-28A0A0C4DH34 117 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 A0A1B0GV50 99 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 SRP19P09132 144 aaKnown RBP10.38□□□□□ -0.75
USP3-221ENST00000561442 BCL2P10415 239 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 GNG5P63218 68 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 RNF212Q495C1 297 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 Q8NAQ8 132 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 CMTM2Q8TAZ6 248 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 TMEM208Q9BTX3 173 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 MANBALQ9NQG1 85 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 VAX2Q9UIW0 290 aa10.38□□□□□ -0.75
USP3-221ENST00000561442 CSMD3Q7Z407 3707 aa10.37□□□□□ -0.75
USP3-221ENST00000561442 DIRC3C9JPN6 131 aa10.37□□□□□ -0.75
USP3-221ENST00000561442 SLC25A5P05141 298 aaKnown RBP10.37□□□□□ -0.75
USP3-221ENST00000561442 RBMY1A1P0DJD3 496 aaKnown RBP10.37□□□□□ -0.75
USP3-221ENST00000561442 RBMY1CP0DJD4 496 aa10.37□□□□□ -0.75
USP3-221ENST00000561442 TSPOP30536 169 aa10.37□□□□□ -0.75
USP3-221ENST00000561442 LEPP41159 167 aa10.37□□□□□ -0.75
USP3-221ENST00000561442 CDKN1BP46527 198 aa10.37□□□□□ -0.75
USP3-221ENST00000561442 UBE2G2P60604 165 aa10.37□□□□□ -0.75
USP3-221ENST00000561442 RBMY1FQ15415 496 aaKnown RBP10.37□□□□□ -0.75
USP3-221ENST00000561442 TMEM78Q5T7P6 136 aa10.37□□□□□ -0.75
USP3-221ENST00000561442 ZNF705AQ6ZN79 300 aaPredicted RBP10.37□□□□□ -0.75
USP3-221ENST00000561442 Q8TAT8 98 aa10.37□□□□□ -0.75
USP3-221ENST00000561442 TXNDC17Q9BRA2 123 aa10.37□□□□□ -0.75
USP3-221ENST00000561442 STARD9Q9P2P6 4700 aa10.36□□□□□ -0.75
USP3-221ENST00000561442 CXorf65A6NEN9 183 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms