RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 C17orf100A8MU93 164 aa12.89□□□□□ -0.35
TPM1-228ENST00000560975 IGFBPL1Q8WX77 278 aa12.89□□□□□ -0.35
TPM1-228ENST00000560975 NDUFA3O95167 84 aa12.88□□□□□ -0.35
TPM1-228ENST00000560975 SCGB2A2Q13296 93 aa12.88□□□□□ -0.35
TPM1-228ENST00000560975 IGHV1-3A0A0C4DH29 117 aa12.88□□□□□ -0.35
TPM1-228ENST00000560975 TMEM178BH3BS89 294 aa12.88□□□□□ -0.35
TPM1-228ENST00000560975 COX7A1P24310 79 aa12.88□□□□□ -0.35
TPM1-228ENST00000560975 DLX6P56179 175 aa12.88□□□□□ -0.35
TPM1-228ENST00000560975 MBD3L4A6NDZ8 208 aaPredicted RBP12.87□□□□□ -0.35
TPM1-228ENST00000560975 MBD3L3A6NE82 208 aaPredicted RBP12.87□□□□□ -0.35
TPM1-228ENST00000560975 MBD3L5A6NJ08 208 aaPredicted RBP12.87□□□□□ -0.35
TPM1-228ENST00000560975 TTC9CQ8N5M4 171 aa12.87□□□□□ -0.35
TPM1-228ENST00000560975 MBD3L2Q8NHZ7 208 aaPredicted RBP12.87□□□□□ -0.35
TPM1-228ENST00000560975 LAMA5O15230 3695 aa12.87□□□□□ -0.35
TPM1-228ENST00000560975 TNRC18O15417 2968 aaPredicted RBP12.87□□□□□ -0.35
TPM1-228ENST00000560975 IGLC6P0CF74 106 aa12.87□□□□□ -0.35
TPM1-228ENST00000560975 SFTA2Q6UW10 78 aa12.87□□□□□ -0.35
TPM1-228ENST00000560975 ADGRG4Q8IZF6 3080 aa12.87□□□□□ -0.35
TPM1-228ENST00000560975 IGHV3OR16-8A0A075B7F1 116 aa12.87□□□□□ -0.35
TPM1-228ENST00000560975 SHISA9B4DS77 424 aa12.87□□□□□ -0.35
TPM1-228ENST00000560975 TMEM155Q4W5P6 130 aa12.87□□□□□ -0.35
TPM1-228ENST00000560975 NXT2Q9NPJ8 142 aaKnown RBP12.87□□□□□ -0.35
TPM1-228ENST00000560975 CD59P13987 128 aa12.86□□□□□ -0.35
TPM1-228ENST00000560975 RRN3P1Q2M238 152 aa12.86□□□□□ -0.35
TPM1-228ENST00000560975 C8orf31Q8N9H6 132 aa12.86□□□□□ -0.35
TPM1-228ENST00000560975 WNK2Q9Y3S1 2297 aa12.86□□□□□ -0.35
TPM1-228ENST00000560975 CEACAM4O75871 244 aa12.86□□□□□ -0.35
TPM1-228ENST00000560975 IGHV3-23P01764 117 aa12.86□□□□□ -0.35
TPM1-228ENST00000560975 CRYBA4P53673 196 aa12.86□□□□□ -0.35
TPM1-228ENST00000560975 ZNF575Q86XF7 245 aa12.86□□□□□ -0.35
TPM1-228ENST00000560975 ATP5LO75964 103 aa12.85□□□□□ -0.35
TPM1-228ENST00000560975 APOMO95445 188 aa12.85□□□□□ -0.35
TPM1-228ENST00000560975 PRO0461Q9UI25 63 aa12.85□□□□□ -0.35
TPM1-228ENST00000560975 FAM215AQ9Y5M1 114 aa12.85□□□□□ -0.35
TPM1-228ENST00000560975 ZGRF1Q86YA3 2104 aa12.85□□□□□ -0.35
TPM1-228ENST00000560975 ADIPOQQ15848 244 aa12.85□□□□□ -0.35
TPM1-228ENST00000560975 TRAV26-2A0A0B4J265 109 aa12.84□□□□□ -0.35
TPM1-228ENST00000560975 EFNA4P52798 201 aa12.84□□□□□ -0.35
TPM1-228ENST00000560975 GEMIN7Q9H840 131 aaKnown RBP12.84□□□□□ -0.35
TPM1-228ENST00000560975 SRSF1Q07955 248 aaKnown RBP eCLIP12.84□□□□□ -0.354e-10■■■□□ 14.7
TPM1-228ENST00000560975 ERCC8Q13216 396 aa12.84□□□□□ -0.35
TPM1-228ENST00000560975 PSMG4Q5JS54 123 aa12.84□□□□□ -0.35
TPM1-228ENST00000560975 DTX2Q86UW9 622 aa12.84□□□□□ -0.35
TPM1-228ENST00000560975 ZNF502Q8TBZ5 544 aa12.84□□□□□ -0.35
TPM1-228ENST00000560975 GFRALQ6UXV0 394 aa12.83□□□□□ -0.35
TPM1-228ENST00000560975 SYT8Q8NBV8 401 aa12.83□□□□□ -0.35
TPM1-228ENST00000560975 MYOZ3Q8TDC0 251 aa12.83□□□□□ -0.35
TPM1-228ENST00000560975 RPEQ96AT9 228 aa12.83□□□□□ -0.35
TPM1-228ENST00000560975 VSTM5A8MXK1 200 aa12.83□□□□□ -0.36
TPM1-228ENST00000560975 MRAP2Q96G30 205 aa12.83□□□□□ -0.36
TPM1-228ENST00000560975 CYSLTR1Q9Y271 337 aa12.83□□□□□ -0.36
TPM1-228ENST00000560975 IGHV3-35A0A0C4DH35 117 aa12.83□□□□□ -0.36
TPM1-228ENST00000560975 TRGV3P03979 118 aa12.83□□□□□ -0.36
TPM1-228ENST00000560975 ZNF883P0CG24 379 aa12.83□□□□□ -0.36
TPM1-228ENST00000560975 PDE6HQ13956 83 aa12.83□□□□□ -0.36
TPM1-228ENST00000560975 THBDP07204 575 aa12.82□□□□□ -0.36
TPM1-228ENST00000560975 Q8N8P6 123 aa12.82□□□□□ -0.36
TPM1-228ENST00000560975 CNOT1A5YKK6 2376 aaKnown RBP12.82□□□□□ -0.36
TPM1-228ENST00000560975 NCBP2LA6PVI3 153 aaKnown RBP12.82□□□□□ -0.36
TPM1-228ENST00000560975 BUB1B-PAK6H3BSN5 160 aa12.82□□□□□ -0.36
TPM1-228ENST00000560975 TCTEX1D4Q5JR98 221 aa12.82□□□□□ -0.36
TPM1-228ENST00000560975 KLK15Q9H2R5 256 aa12.82□□□□□ -0.36
TPM1-228ENST00000560975 LINC01546A6NGU7 62 aa12.81□□□□□ -0.36
TPM1-228ENST00000560975 IGLV1-47P01700 117 aa12.81□□□□□ -0.36
TPM1-228ENST00000560975 DEFB109BQ30KR1 87 aa12.81□□□□□ -0.36
TPM1-228ENST00000560975 PGPEP1Q9NXJ5 209 aa12.81□□□□□ -0.36
TPM1-228ENST00000560975 UFC1Q9Y3C8 167 aa12.81□□□□□ -0.36
TPM1-228ENST00000560975 GLMPQ8WWB7 406 aa12.8□□□□□ -0.36
TPM1-228ENST00000560975 TRBV7-3A0A075B6L6 115 aa12.8□□□□□ -0.36
TPM1-228ENST00000560975 TNFRSF13BO14836 293 aaPredicted RBP12.8□□□□□ -0.36
TPM1-228ENST00000560975 SPINK8P0C7L1 97 aa12.8□□□□□ -0.36
TPM1-228ENST00000560975 FOXI1Q12951 378 aa12.8□□□□□ -0.36
TPM1-228ENST00000560975 TAL2Q16559 108 aa12.8□□□□□ -0.36
TPM1-228ENST00000560975 C3orf36Q3SXR2 165 aa12.8□□□□□ -0.36
TPM1-228ENST00000560975 SH3BGRL2Q9UJC5 107 aa12.8□□□□□ -0.36
TPM1-228ENST00000560975 FABP5P3A8MUU1 101 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 CDX4O14627 284 aaPredicted RBP12.79□□□□□ -0.36
TPM1-228ENST00000560975 C8orf86Q6ZUL3 223 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 IGLV2-18A0A075B6J9 118 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 A0A087WX48 190 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 PRAC2D3DTV9 90 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 MT-ATP8P03928 68 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 BSPH1Q075Z2 132 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 LAGE3Q14657 143 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 MORN3Q6PF18 240 aaPredicted RBP12.79□□□□□ -0.36
TPM1-228ENST00000560975 ZNF418Q8TF45 676 aaPredicted RBP12.79□□□□□ -0.36
TPM1-228ENST00000560975 PTH2Q96A98 100 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 MRPL16Q9NX20 251 aaKnown RBP12.79□□□□□ -0.36
TPM1-228ENST00000560975 MGAQ8IWI9 3026 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 HOXA3O43365 443 aaPredicted RBP12.79□□□□□ -0.36
TPM1-228ENST00000560975 DYNAPQ8N1N2 210 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 NUP37Q8NFH4 326 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 CFHR4Q92496 578 aa12.79□□□□□ -0.36
TPM1-228ENST00000560975 DMXL1Q9Y485 3027 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 LOC107984156A0A0G2JMH3 177 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 TIMM23O14925 209 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 IGHG4P01861 327 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 ASCL5Q7RTU5 278 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 ARL17AQ8IVW1 177 aa12.78□□□□□ -0.36
TPM1-228ENST00000560975 CDIP1Q9H305 208 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms