RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 TRAV8-1A0A0A6YYK1 113 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 TRAV34A0A0B4J273 112 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 RBAKDNA6NC62 111 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 NPIPB6E9PJ23 425 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 PDE6DO43924 150 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 IGHV4-30-4P0DP06 118 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 RPL35AP18077 110 aaKnown RBP7.09□□□□□ -1.27
CUX1-216ENST00000558469 SRSF3P84103 164 aaKnown RBP7.09□□□□□ -1.27
CUX1-216ENST00000558469 TMEM78Q5T7P6 136 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 C9orf47Q6ZRZ4 202 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 CYB561D1Q8N8Q1 229 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 LINC00477Q96M19 166 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 LINC00479Q96M42 142 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 AGPAT4-IT1Q9H0P7 198 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 PPP1R14DQ9NXH3 145 aa7.09□□□□□ -1.27
CUX1-216ENST00000558469 SERTM2A0A1B0GWG4 89 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 RBMY1BA6NDE4 496 aaKnown RBP7.08□□□□□ -1.28
CUX1-216ENST00000558469 RBMY1EA6NEQ0 496 aaKnown RBP7.08□□□□□ -1.28
CUX1-216ENST00000558469 K7EIL1 84 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 RBMY1DP0C7P1 496 aaKnown RBP7.08□□□□□ -1.28
CUX1-216ENST00000558469 CT45A10P0DMU9 189 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 AKR1C3P42330 323 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 CEBPGP53567 150 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 UBE2G1P62253 170 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 PEA15Q15121 130 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 DEFB121Q5J5C9 76 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 TRPT1Q86TN4 253 aaKnown RBP7.08□□□□□ -1.28
CUX1-216ENST00000558469 TMEM75Q8N9X5 138 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 ASCL2Q99929 193 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 MED9Q9NWA0 146 aa7.08□□□□□ -1.28
CUX1-216ENST00000558469 RAB19A4D1S5 217 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 LINC00862A6NCI5 91 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 IGLV2-11P01706 119 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 SRP19P09132 144 aaKnown RBP7.07□□□□□ -1.28
CUX1-216ENST00000558469 ZNF138P52744 262 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 FXYD7P58549 80 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 FLI1Q01543 452 aaPredicted RBP7.07□□□□□ -1.28
CUX1-216ENST00000558469 PRNTQ86SH4 94 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 COMMD7Q86VX2 200 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 Q8TAT8 98 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 C2CD4CQ8TF44 421 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 C11orf52Q96A22 123 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 FMC1Q96HJ9 113 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 CLUHP3Q96NS8 147 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 DERL1Q9BUN8 251 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 SLC35B3Q9H1N7 401 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 TREM1Q9NP99 234 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 ZNF492Q9P255 531 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 PSG8Q9UQ74 426 aa7.07□□□□□ -1.28
CUX1-216ENST00000558469 LOC102724200A0A096LPH7 203 aaPredicted RBP7.06□□□□□ -1.28
CUX1-216ENST00000558469 A8MTW9 85 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 A8MZ25 164 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 C9JQL5 133 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 TMEM250H0YL14 139 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 J3KRW8 73 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 M0R2Z0 102 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 S100A9P06702 114 aaKnown RBP7.06□□□□□ -1.28
CUX1-216ENST00000558469 FRMD6-AS1P0C7T7 363 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 RPL35P42766 123 aaKnown RBP7.06□□□□□ -1.28
CUX1-216ENST00000558469 NUTF2P61970 127 aaKnown RBP7.06□□□□□ -1.28
CUX1-216ENST00000558469 TMEM183BQ1AE95 376 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 SPINK13Q1W4C9 94 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 ZNF674Q2M3X9 581 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 AMTNQ6UX39 209 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 SMDT1Q9H4I9 107 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 KLF12Q9Y4X4 402 aa7.06□□□□□ -1.28
CUX1-216ENST00000558469 FBLL1A6NHQ2 334 aaKnown RBP7.05□□□□□ -1.28
CUX1-216ENST00000558469 NDUFS6O75380 124 aaKnown RBP7.05□□□□□ -1.28
CUX1-216ENST00000558469 GPX1P07203 203 aa7.05□□□□□ -1.28
CUX1-216ENST00000558469 LEPP41159 167 aa7.05□□□□□ -1.28
CUX1-216ENST00000558469 Q86TA4 180 aa7.05□□□□□ -1.28
CUX1-216ENST00000558469 TVP23CQ96ET8 276 aa7.05□□□□□ -1.28
CUX1-216ENST00000558469 FAM19A4Q96LR4 140 aa7.05□□□□□ -1.28
CUX1-216ENST00000558469 C8orf49Q96NF6 230 aa7.05□□□□□ -1.28
CUX1-216ENST00000558469 ODF3Q96PU9 254 aa7.05□□□□□ -1.28
CUX1-216ENST00000558469 CSTL1Q9H114 145 aa7.05□□□□□ -1.28
CUX1-216ENST00000558469 PARLQ9H300 379 aa7.05□□□□□ -1.28
CUX1-216ENST00000558469 TRAV12-2A0A075B6T6 113 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 TRBV6-1A0A0K0K1D8 114 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 CA1P00915 261 aaPredicted RBP7.04□□□□□ -1.28
CUX1-216ENST00000558469 LTAP01374 205 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 TSPOP30536 169 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 CDKN1BP46527 198 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 APOC4P55056 127 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 TAS2R60P59551 318 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 DEFA6Q01524 100 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 KIR3DS1Q14943 382 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 SAPCD1Q5SSQ6 148 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 MORN3Q6PF18 240 aaPredicted RBP7.04□□□□□ -1.28
CUX1-216ENST00000558469 LINC00322Q6ZN03 302 aaPredicted RBP7.04□□□□□ -1.28
CUX1-216ENST00000558469 NHLRC2Q8NBF2 726 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 MRAPQ8TCY5 172 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 NDFIP1Q9BT67 221 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 XCL2Q9UBD3 114 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 LENEPQ9Y5L5 61 aa7.04□□□□□ -1.28
CUX1-216ENST00000558469 KIR2DL5BA0A0G2JN68 375 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 KIR2DL5BA0A0G2JPC4 375 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 TRBV7-9A0A0J9YWB2 115 aa7.03□□□□□ -1.28
CUX1-216ENST00000558469 GIG44P09565 113 aaPredicted RBP7.03□□□□□ -1.28
CUX1-216ENST00000558469 SFTA3P0C7M3 94 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms