RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SMAD5-AS1Q9Y6J3 95 aa13.65□□□□□ -0.22
SYNE3-202ENST00000553340 TNFRSF6BO95407 300 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 IGHG4P01861 327 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 PRSS1P07477 247 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 ODF1Q14990 250 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 ZMAT4Q9H898 229 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 HIGD1BQ9P298 99 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 POLEQ07864 2286 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 HLA-DMBP28068 263 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 RIPPLY3P57055 190 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 ZNF672Q499Z4 452 aaPredicted RBP13.64□□□□□ -0.23
SYNE3-202ENST00000553340 TM4SF20Q53R12 229 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 HHLA3Q9XRX5 114 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 ZNF318Q5VUA4 2279 aa13.64□□□□□ -0.23
SYNE3-202ENST00000553340 GCSHP23434 173 aa13.63□□□□□ -0.23
SYNE3-202ENST00000553340 S100A7P31151 101 aa13.63□□□□□ -0.23
SYNE3-202ENST00000553340 LINC01559Q495D7 138 aa13.63□□□□□ -0.23
SYNE3-202ENST00000553340 LAMA5O15230 3695 aa13.63□□□□□ -0.23
SYNE3-202ENST00000553340 GAS8-AS1O95177 125 aa13.63□□□□□ -0.23
SYNE3-202ENST00000553340 CTSGP08311 255 aa13.63□□□□□ -0.23
SYNE3-202ENST00000553340 SAMD5Q5TGI4 173 aa13.63□□□□□ -0.23
SYNE3-202ENST00000553340 Q8NA96 180 aa13.63□□□□□ -0.23
SYNE3-202ENST00000553340 IGKV2D-26A0A0A0MRZ7 120 aa13.62□□□□□ -0.23
SYNE3-202ENST00000553340 NCBP2LA6PVI3 153 aaKnown RBP13.62□□□□□ -0.23
SYNE3-202ENST00000553340 IGKCP01834 107 aa13.62□□□□□ -0.23
SYNE3-202ENST00000553340 NDPQ00604 133 aa13.62□□□□□ -0.23
SYNE3-202ENST00000553340 KLRD1Q13241 179 aa13.62□□□□□ -0.23
SYNE3-202ENST00000553340 EVI2AP22794 236 aa13.62□□□□□ -0.23
SYNE3-202ENST00000553340 APC2O95996 2303 aa13.61□□□□□ -0.23
SYNE3-202ENST00000553340 CHAC1Q9BUX1 264 aa13.61□□□□□ -0.23
SYNE3-202ENST00000553340 SMPXQ9UHP9 88 aa13.61□□□□□ -0.23
SYNE3-202ENST00000553340 FXYD2P54710 66 aa13.6□□□□□ -0.23
SYNE3-202ENST00000553340 DYNAPQ8N1N2 210 aa13.6□□□□□ -0.23
SYNE3-202ENST00000553340 ODF3BA8MYP8 253 aa13.6□□□□□ -0.23
SYNE3-202ENST00000553340 ATP5LO75964 103 aa13.6□□□□□ -0.23
SYNE3-202ENST00000553340 ERCC8Q13216 396 aa13.6□□□□□ -0.23
SYNE3-202ENST00000553340 PSMG3-AS1Q96PY0 264 aa13.6□□□□□ -0.23
SYNE3-202ENST00000553340 FOXC2Q99958 501 aa13.6□□□□□ -0.23
SYNE3-202ENST00000553340 Q8N8P6 123 aa13.6□□□□□ -0.23
SYNE3-202ENST00000553340 TMEM158Q8WZ71 300 aa13.6□□□□□ -0.23
SYNE3-202ENST00000553340 TTTY13Q9BZ97 58 aa13.6□□□□□ -0.23
SYNE3-202ENST00000553340 DMXL1Q9Y485 3027 aa13.59□□□□□ -0.23
SYNE3-202ENST00000553340 IGHV3OR16-8A0A075B7F1 116 aa13.59□□□□□ -0.23
SYNE3-202ENST00000553340 M0R1W7 72 aa13.59□□□□□ -0.23
SYNE3-202ENST00000553340 DPM2O94777 84 aa13.59□□□□□ -0.23
SYNE3-202ENST00000553340 DTX2Q86UW9 622 aa13.59□□□□□ -0.23
SYNE3-202ENST00000553340 LINC01560Q8TB33 94 aa13.59□□□□□ -0.23
SYNE3-202ENST00000553340 SMIM17P0DL12 118 aa13.59□□□□□ -0.23
SYNE3-202ENST00000553340 GATA1P15976 413 aaPredicted RBP13.59□□□□□ -0.23
SYNE3-202ENST00000553340 PRTN3P24158 256 aa13.59□□□□□ -0.23
SYNE3-202ENST00000553340 PPIFP30405 207 aaKnown RBP13.59□□□□□ -0.23
SYNE3-202ENST00000553340 CCDC144NLQ6NUI1 221 aa13.59□□□□□ -0.23
SYNE3-202ENST00000553340 ZC2HC1BQ5TFG8 222 aa13.58□□□□□ -0.24
SYNE3-202ENST00000553340 GTSCR1Q86UQ5 136 aa13.58□□□□□ -0.24
SYNE3-202ENST00000553340 ACACAQ13085 2346 aa13.58□□□□□ -0.24
SYNE3-202ENST00000553340 TRBV25-1A0A075B6N4 114 aa13.58□□□□□ -0.24
SYNE3-202ENST00000553340 IGHV3-35A0A0C4DH35 117 aa13.58□□□□□ -0.24
SYNE3-202ENST00000553340 ARHGAP32A7KAX9 2087 aa13.57□□□□□ -0.24
SYNE3-202ENST00000553340 RBAKDNA6NC62 111 aa13.57□□□□□ -0.24
SYNE3-202ENST00000553340 PRAC2D3DTV9 90 aa13.57□□□□□ -0.24
SYNE3-202ENST00000553340 TIMD4Q96H15 378 aa13.57□□□□□ -0.24
SYNE3-202ENST00000553340 TACC2O95359 2948 aa13.57□□□□□ -0.24
SYNE3-202ENST00000553340 TMEM8BA6NDV4 472 aa13.57□□□□□ -0.24
SYNE3-202ENST00000553340 RAB9AP51151 201 aa13.57□□□□□ -0.24
SYNE3-202ENST00000553340 PRR30Q53SZ7 412 aaPredicted RBP13.57□□□□□ -0.24
SYNE3-202ENST00000553340 IL17RELQ6ZVW7 336 aa13.57□□□□□ -0.24
SYNE3-202ENST00000553340 LY6HO94772 140 aa13.56□□□□□ -0.24
SYNE3-202ENST00000553340 Q8N6K4 173 aa13.56□□□□□ -0.24
SYNE3-202ENST00000553340 IGLV2-18A0A075B6J9 118 aa13.56□□□□□ -0.24
SYNE3-202ENST00000553340 TMEM238C9JI98 176 aa13.56□□□□□ -0.24
SYNE3-202ENST00000553340 HLA-DRB4P13762 266 aa13.56□□□□□ -0.24
SYNE3-202ENST00000553340 TM2D2Q9BX73 214 aa13.56□□□□□ -0.24
SYNE3-202ENST00000553340 HLA-DRB4X5D2U9 266 aa13.56□□□□□ -0.24
SYNE3-202ENST00000553340 ANKRD11Q6UB99 2663 aaPredicted RBP13.55□□□□□ -0.24
SYNE3-202ENST00000553340 CEND1Q8N111 149 aa13.55□□□□□ -0.24
SYNE3-202ENST00000553340 RNF182Q8N6D2 247 aa13.55□□□□□ -0.24
SYNE3-202ENST00000553340 VKORC1Q9BQB6 163 aa13.55□□□□□ -0.24
SYNE3-202ENST00000553340 TMEM160Q9NX00 188 aa13.55□□□□□ -0.24
SYNE3-202ENST00000553340 IGKV3D-20A0A0C4DH25 116 aa13.55□□□□□ -0.24
SYNE3-202ENST00000553340 K7ERJ3 54 aa13.55□□□□□ -0.24
SYNE3-202ENST00000553340 MYOZ3Q8TDC0 251 aa13.55□□□□□ -0.24
SYNE3-202ENST00000553340 SLC50A1Q9BRV3 221 aa13.55□□□□□ -0.24
SYNE3-202ENST00000553340 NHP2Q9NX24 153 aaKnown RBP13.55□□□□□ -0.24
SYNE3-202ENST00000553340 BUB3O43684 328 aa13.54□□□□□ -0.24
SYNE3-202ENST00000553340 TMEM11P17152 192 aa13.54□□□□□ -0.24
SYNE3-202ENST00000553340 SRSF1Q07955 248 aaKnown RBP eCLIP13.54□□□□□ -0.24
SYNE3-202ENST00000553340 VMO1Q7Z5L0 202 aa13.54□□□□□ -0.24
SYNE3-202ENST00000553340 PHLDA1Q8WV24 401 aaPredicted RBP13.54□□□□□ -0.24
SYNE3-202ENST00000553340 IGHV7-81A0A0B4J1V7 117 aa13.54□□□□□ -0.24
SYNE3-202ENST00000553340 TRAV40A0A0B4J280 105 aa13.54□□□□□ -0.24
SYNE3-202ENST00000553340 OOSP1A8MZH6 123 aa13.54□□□□□ -0.24
SYNE3-202ENST00000553340 RPL24P83731 157 aaKnown RBP13.54□□□□□ -0.24
SYNE3-202ENST00000553340 EBI3Q14213 229 aa13.53□□□□□ -0.24
SYNE3-202ENST00000553340 LAGE3Q14657 143 aa13.53□□□□□ -0.24
SYNE3-202ENST00000553340 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.53□□□□□ -0.24
SYNE3-202ENST00000553340 MRPL35Q9NZE8 188 aaKnown RBP13.53□□□□□ -0.24
SYNE3-202ENST00000553340 TRGV3P03979 118 aa13.53□□□□□ -0.24
SYNE3-202ENST00000553340 C15orf32Q32M92 178 aa13.53□□□□□ -0.24
SYNE3-202ENST00000553340 ZFAND3Q9H8U3 227 aa13.53□□□□□ -0.24
SYNE3-202ENST00000553340 PRSS47A8MTI9 375 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms