RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 IGHV3-23P01764 117 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 IGHG4P01861 327 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 HBDP02042 147 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 HSD52Q0P140 79 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 KIR3DS1Q14943 382 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 COX8CQ7Z4L0 72 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 RAB37Q96AX2 223 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 FANCD2OSQ96PS1 177 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 VGLL1Q99990 258 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 NPFFR1Q9GZQ6 430 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 MEGF9Q9H1U4 602 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 AAMDCQ9H7C9 122 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 NBASA2RRP1 2371 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 ZFHX2Q9C0A1 2572 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-212ENST00000552491 TLN1Q9Y490 2541 aaKnown RBP4.22□□□□□ -1.73
LIMA1-212ENST00000552491 IGHV3OR16-8A0A075B7F1 116 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 IGKV2D-26A0A0A0MRZ7 120 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 NDUFS7O75251 213 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 RIPPLY3P57055 190 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 TM4SF20Q53R12 229 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 FER1L6-AS1Q8NA97 138 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 OR4X2Q8NGF9 303 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 IFI27L1Q96BM0 104 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 PRR25Q96S07 402 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 RAB1BQ9H0U4 201 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 JKAMPQ9P055 326 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 PTPRZ1P23471 2315 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-212ENST00000552491 PPIAL4CA0A0B4J2A2 164 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 NPIPB5A8MRT5 1133 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 K7EP34 96 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 LY6HO94772 140 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 PPIAL4GP0DN37 164 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 GATA1P15976 413 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-212ENST00000552491 CKS2P33552 79 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 NMUP48645 174 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 NDPQ00604 133 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 CFHR4Q92496 578 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 RNF185Q96GF1 192 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 C18orf15Q96N68 181 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 SMAD5-AS1Q9Y6J3 95 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 AGRNO00468 2067 aa4.22□□□□□ -1.73
LIMA1-212ENST00000552491 HRNRQ86YZ3 2850 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-212ENST00000552491 ANKHD1Q8IWZ3 2542 aaKnown RBP4.21□□□□□ -1.73
LIMA1-212ENST00000552491 A0A0G2JLM5 398 aa4.21□□□□□ -1.73
LIMA1-212ENST00000552491 FBLL1A6NHQ2 334 aaKnown RBP4.21□□□□□ -1.73
LIMA1-212ENST00000552491 PRRG2O14669 202 aa4.21□□□□□ -1.73
LIMA1-212ENST00000552491 IGLC6P0CF74 106 aa4.21□□□□□ -1.73
LIMA1-212ENST00000552491 KLRD1Q13241 179 aa4.21□□□□□ -1.73
LIMA1-212ENST00000552491 TWIST1Q15672 202 aa4.21□□□□□ -1.73
LIMA1-212ENST00000552491 PRR30Q53SZ7 412 aaPredicted RBP4.21□□□□□ -1.73
LIMA1-212ENST00000552491 PSMG4Q5JS54 123 aa4.21□□□□□ -1.73
LIMA1-212ENST00000552491 Q8NA96 180 aa4.21□□□□□ -1.73
LIMA1-212ENST00000552491 OR2K2Q8NGT1 345 aa4.21□□□□□ -1.73
LIMA1-212ENST00000552491 PIFOQ8TCI5 191 aa4.21□□□□□ -1.73
LIMA1-212ENST00000552491 IGLV11-55A0A075B6I3 123 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 IGHV3-35A0A0C4DH35 117 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 PRAC2D3DTV9 90 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 G3V4G9 280 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 K7EMI3 77 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 NBR2O15453 112 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 GNG7O60262 68 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 EVI2AP22794 236 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 PPIFP30405 207 aaKnown RBP4.21□□□□□ -1.74
LIMA1-212ENST00000552491 BMI1P35226 326 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 ZNF48Q96MX3 618 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-212ENST00000552491 ONECUT1Q9UBC0 465 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 HHLA3Q9XRX5 114 aa4.21□□□□□ -1.74
LIMA1-212ENST00000552491 A0A1W2PPM0 123 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 LINC01546A6NGU7 62 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 CEACAM3P40198 252 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 FXYD2P54710 66 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 MFAP4P55083 255 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 SRSF2Q01130 221 aaKnown RBP4.2□□□□□ -1.74
LIMA1-212ENST00000552491 ZNF562Q6V9R5 426 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 NPBQ8NG41 125 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 OR5A1Q8NGJ0 315 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-212ENST00000552491 B9A039 149 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 K7ERJ3 54 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 NDUFA3O95167 84 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 RPL7P18124 248 aaKnown RBP4.2□□□□□ -1.74
LIMA1-212ENST00000552491 ERCC8Q13216 396 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 ODF1Q14990 250 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 NEGR1Q7Z3B1 354 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 DYNAPQ8N1N2 210 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 KRTAP4-9Q9BYQ8 210 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 ZMAT4Q9H898 229 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 VPS13CQ709C8 3753 aa4.2□□□□□ -1.74
LIMA1-212ENST00000552491 CTSGP08311 255 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 LEPP41159 167 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 HES1Q14469 280 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 C5orf64Q2M2E5 130 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 Q6ZQT7 251 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 LY6G5BQ8NDX9 201 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 LINC01560Q8TB33 94 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 CNFNQ9BYD5 112 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 MAP1LC3AQ9H492 121 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 HIGD1BQ9P298 99 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 DPM3Q9P2X0 92 aa4.19□□□□□ -1.74
LIMA1-212ENST00000552491 SPCS1Q9Y6A9 102 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms