RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 NUTF2P61970 127 aaKnown RBP11.88□□□□□ -0.51
PRPF40A-212ENST00000545856 GNG5P63218 68 aa11.88□□□□□ -0.51
PRPF40A-212ENST00000545856 COX8CQ7Z4L0 72 aa11.88□□□□□ -0.51
PRPF40A-212ENST00000545856 BIN3Q9NQY0 253 aa11.88□□□□□ -0.51
PRPF40A-212ENST00000545856 ZNF492Q9P255 531 aa11.88□□□□□ -0.51
PRPF40A-212ENST00000545856 A8MZ25 164 aa11.87□□□□□ -0.51
PRPF40A-212ENST00000545856 H3BMM0 161 aa11.87□□□□□ -0.51
PRPF40A-212ENST00000545856 RPL35P42766 123 aaKnown RBP11.87□□□□□ -0.51
PRPF40A-212ENST00000545856 HIST1H1AQ02539 215 aaPredicted RBP11.87□□□□□ -0.51
PRPF40A-212ENST00000545856 SOHLH1Q5JUK2 328 aa11.87□□□□□ -0.51
PRPF40A-212ENST00000545856 STHQ8IWL8 128 aa11.87□□□□□ -0.51
PRPF40A-212ENST00000545856 PSG8Q9UQ74 426 aa11.87□□□□□ -0.51
PRPF40A-212ENST00000545856 AGRNO00468 2067 aa11.86□□□□□ -0.51
PRPF40A-212ENST00000545856 PRAC2D3DTV9 90 aa11.86□□□□□ -0.51
PRPF40A-212ENST00000545856 G3V4G9 280 aa11.86□□□□□ -0.51
PRPF40A-212ENST00000545856 LTAP01374 205 aa11.86□□□□□ -0.51
PRPF40A-212ENST00000545856 IGLV2-11P01706 119 aa11.86□□□□□ -0.51
PRPF40A-212ENST00000545856 CRISP2P16562 243 aa11.86□□□□□ -0.51
PRPF40A-212ENST00000545856 MORN3Q6PF18 240 aaPredicted RBP11.86□□□□□ -0.51
PRPF40A-212ENST00000545856 Q86TA4 180 aa11.86□□□□□ -0.51
PRPF40A-212ENST00000545856 PARLQ9H300 379 aa11.86□□□□□ -0.51
PRPF40A-212ENST00000545856 RPH3ALQ9UNE2 315 aa11.86□□□□□ -0.51
PRPF40A-212ENST00000545856 IGKV2-40A0A087WW87 121 aaPredicted RBP11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 TMEM218A2RU14 115 aa11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 KRBOX1C9JBD0 128 aa11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 IGKV2D-40P01614 121 aaPredicted RBP11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 SFTA3P0C7M3 94 aa11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 LEPP41159 167 aa11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 ACTL10Q5JWF8 245 aa11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 TRPT1Q86TN4 253 aaKnown RBP11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 Q8N1Y9 231 aa11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 FAM19A4Q96LR4 140 aa11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 SMIM7Q9BQ49 75 aa11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 AGPAT4-IT1Q9H0P7 198 aa11.85□□□□□ -0.51
PRPF40A-212ENST00000545856 ZNF727A8MUV8 499 aa11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 GNG4P50150 75 aa11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 SRSF3P84103 164 aaKnown RBP11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 PNRC1Q12796 327 aaPredicted RBP11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 APRG1Q8IVJ8 170 aa11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 TMEM183AQ8IXX5 376 aa11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 IGF2BP2-AS1Q96M15 143 aa11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 PRR25Q96S07 402 aa11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 VGLL1Q99990 258 aa11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 C20orf144Q9BQM9 153 aa11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 C1QTNF4Q9BXJ3 329 aa11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 SEC11CQ9BY50 192 aa11.84□□□□□ -0.51
PRPF40A-212ENST00000545856 KIR2DL5BA0A0G2JN68 375 aa11.83□□□□□ -0.52
PRPF40A-212ENST00000545856 KIR2DL5BA0A0G2JPC4 375 aa11.83□□□□□ -0.52
PRPF40A-212ENST00000545856 KRTAP10-11P60412 298 aa11.83□□□□□ -0.52
PRPF40A-212ENST00000545856 KIR2DL5AQ8N109 375 aa11.83□□□□□ -0.52
PRPF40A-212ENST00000545856 KIR2DL5BQ8NHK3 375 aa11.83□□□□□ -0.52
PRPF40A-212ENST00000545856 NIPSNAP3BQ9BS92 247 aa11.83□□□□□ -0.52
PRPF40A-212ENST00000545856 C9JQL5 133 aa11.82□□□□□ -0.52
PRPF40A-212ENST00000545856 F6UB75 175 aa11.82□□□□□ -0.52
PRPF40A-212ENST00000545856 CT45A10P0DMU9 189 aa11.82□□□□□ -0.52
PRPF40A-212ENST00000545856 CDKN1BP46527 198 aa11.82□□□□□ -0.52
PRPF40A-212ENST00000545856 CENPWQ5EE01 88 aa11.82□□□□□ -0.52
PRPF40A-212ENST00000545856 GDF5OSQ5U4N7 250 aa11.82□□□□□ -0.52
PRPF40A-212ENST00000545856 AMTNQ6UX39 209 aa11.82□□□□□ -0.52
PRPF40A-212ENST00000545856 BAGE2Q86Y30 109 aa11.82□□□□□ -0.52
PRPF40A-212ENST00000545856 MLST8Q9BVC4 326 aa11.82□□□□□ -0.52
PRPF40A-212ENST00000545856 NAT8Q9UHE5 227 aa11.82□□□□□ -0.52
PRPF40A-212ENST00000545856 TRAV8-1A0A0A6YYK1 113 aa11.81□□□□□ -0.52
PRPF40A-212ENST00000545856 KNCNA6PVL3 124 aa11.81□□□□□ -0.52
PRPF40A-212ENST00000545856 KLLNB2CW77 178 aa11.81□□□□□ -0.52
PRPF40A-212ENST00000545856 SMUG1Q53HV7 270 aa11.81□□□□□ -0.52
PRPF40A-212ENST00000545856 PRNTQ86SH4 94 aa11.81□□□□□ -0.52
PRPF40A-212ENST00000545856 OR4B1Q8NGF8 309 aa11.81□□□□□ -0.52
PRPF40A-212ENST00000545856 DERL1Q9BUN8 251 aa11.81□□□□□ -0.52
PRPF40A-212ENST00000545856 SRD5A3Q9H8P0 318 aa11.81□□□□□ -0.52
PRPF40A-212ENST00000545856 LOC102724200A0A096LPH7 203 aaPredicted RBP11.8□□□□□ -0.52
PRPF40A-212ENST00000545856 UBE2CO00762 179 aa11.8□□□□□ -0.52
PRPF40A-212ENST00000545856 CEBPGP53567 150 aa11.8□□□□□ -0.52
PRPF40A-212ENST00000545856 APOC4P55056 127 aa11.8□□□□□ -0.52
PRPF40A-212ENST00000545856 TMEM241Q24JQ0 296 aa11.8□□□□□ -0.52
PRPF40A-212ENST00000545856 ZNF674Q2M3X9 581 aa11.8□□□□□ -0.52
PRPF40A-212ENST00000545856 C10orf91Q5T1B1 145 aa11.8□□□□□ -0.52
PRPF40A-212ENST00000545856 DEFB125Q8N687 156 aa11.8□□□□□ -0.52
PRPF40A-212ENST00000545856 LINC00479Q96M42 142 aa11.8□□□□□ -0.52
PRPF40A-212ENST00000545856 CARHSP1Q9Y2V2 147 aaKnown RBP11.8□□□□□ -0.52
PRPF40A-212ENST00000545856 TRBV20OR9-2A0A075B6H5 130 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 TRAV34A0A0B4J273 112 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 F8W036 122 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 ERCC8Q13216 396 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 ASCL2Q99929 193 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 TUBA4BQ9H853 241 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 Q6AWC8 147 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 TMEM256Q8N2U0 113 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 ZFAND2AQ8N6M9 145 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 Q8TAT8 98 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 CITED4Q96RK1 184 aa11.79□□□□□ -0.52
PRPF40A-212ENST00000545856 GPX1P07203 203 aa11.78□□□□□ -0.52
PRPF40A-212ENST00000545856 ZNF705DP0CH99 300 aaPredicted RBP11.78□□□□□ -0.52
PRPF40A-212ENST00000545856 ZNF705BP0CI00 300 aaPredicted RBP11.78□□□□□ -0.52
PRPF40A-212ENST00000545856 IGHV4-30-4P0DP06 118 aa11.78□□□□□ -0.52
PRPF40A-212ENST00000545856 DEFB1P60022 68 aa11.78□□□□□ -0.52
PRPF40A-212ENST00000545856 ZNF124Q15973 351 aa11.78□□□□□ -0.52
PRPF40A-212ENST00000545856 LINC00322Q6ZN03 302 aaPredicted RBP11.78□□□□□ -0.52
PRPF40A-212ENST00000545856 LINC01551Q86U37 167 aa11.78□□□□□ -0.52
PRPF40A-212ENST00000545856 TVP23CQ96ET8 276 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms