RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 C1orf194Q5T5A4 169 aa12.53□□□□□ -0.4
COL4A1-204ENST00000543140 DOPEY2Q9Y3R5 2298 aa12.53□□□□□ -0.4
COL4A1-204ENST00000543140 M0QZK8 103 aa12.53□□□□□ -0.4
COL4A1-204ENST00000543140 RIGQ13278 110 aa12.53□□□□□ -0.4
COL4A1-204ENST00000543140 DEFB112Q30KQ8 113 aa12.53□□□□□ -0.4
COL4A1-204ENST00000543140 LYZL1Q6UWQ5 148 aa12.53□□□□□ -0.4
COL4A1-204ENST00000543140 C8orf86Q6ZUL3 223 aa12.53□□□□□ -0.4
COL4A1-204ENST00000543140 ARL6IP6Q8N6S5 226 aa12.53□□□□□ -0.4
COL4A1-204ENST00000543140 A0A096LNT2 108 aa12.52□□□□□ -0.4
COL4A1-204ENST00000543140 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.52□□□□□ -0.4
COL4A1-204ENST00000543140 TRAV8-2A0A0B4J237 113 aa12.52□□□□□ -0.4
COL4A1-204ENST00000543140 RNF223E7ERA6 249 aa12.52□□□□□ -0.4
COL4A1-204ENST00000543140 IGHV4-59P01825 116 aa12.52□□□□□ -0.4
COL4A1-204ENST00000543140 GATA3P23771 443 aa12.52□□□□□ -0.4
COL4A1-204ENST00000543140 PMCHL1Q16048 86 aa12.52□□□□□ -0.4
COL4A1-204ENST00000543140 URB1-AS1Q96HZ7 61 aa12.52□□□□□ -0.4
COL4A1-204ENST00000543140 U3KQE9 123 aa12.52□□□□□ -0.4
COL4A1-204ENST00000543140 SLC50A1Q9BRV3 221 aa12.52□□□□□ -0.41
COL4A1-204ENST00000543140 M0R2Z0 102 aa12.51□□□□□ -0.41
COL4A1-204ENST00000543140 SMAD7O15105 426 aaKnown RBP12.51□□□□□ -0.41
COL4A1-204ENST00000543140 IL17RELQ6ZVW7 336 aa12.51□□□□□ -0.41
COL4A1-204ENST00000543140 SELENOKQ9Y6D0 94 aa12.51□□□□□ -0.41
COL4A1-204ENST00000543140 C3orf79P0CE67 100 aa12.51□□□□□ -0.41
COL4A1-204ENST00000543140 ZNF138P52744 262 aa12.51□□□□□ -0.41
COL4A1-204ENST00000543140 OR4X2Q8NGF9 303 aa12.51□□□□□ -0.41
COL4A1-204ENST00000543140 BORCS7Q96B45 105 aa12.51□□□□□ -0.41
COL4A1-204ENST00000543140 NDFIP1Q9BT67 221 aa12.51□□□□□ -0.41
COL4A1-204ENST00000543140 TMEM213A2RRL7 107 aa12.5□□□□□ -0.41
COL4A1-204ENST00000543140 ORM1P02763 201 aa12.5□□□□□ -0.41
COL4A1-204ENST00000543140 COX8CQ7Z4L0 72 aa12.5□□□□□ -0.41
COL4A1-204ENST00000543140 Q8N976 141 aa12.5□□□□□ -0.41
COL4A1-204ENST00000543140 PAM16Q9Y3D7 125 aa12.5□□□□□ -0.41
COL4A1-204ENST00000543140 FBLL1A6NHQ2 334 aaKnown RBP12.5□□□□□ -0.41
COL4A1-204ENST00000543140 Q6AWC8 147 aa12.5□□□□□ -0.41
COL4A1-204ENST00000543140 TEX43Q6ZNM6 134 aa12.5□□□□□ -0.41
COL4A1-204ENST00000543140 USMG5Q96IX5 58 aa12.5□□□□□ -0.41
COL4A1-204ENST00000543140 AGPAT4-IT1Q9H0P7 198 aa12.5□□□□□ -0.41
COL4A1-204ENST00000543140 CSN3P07498 182 aa12.49□□□□□ -0.41
COL4A1-204ENST00000543140 ATP6V0BQ99437 205 aa12.49□□□□□ -0.41
COL4A1-204ENST00000543140 TEX15Q9BXT5 2789 aa12.49□□□□□ -0.41
COL4A1-204ENST00000543140 MXRA5Q9NR99 2828 aa12.49□□□□□ -0.41
COL4A1-204ENST00000543140 BMI1P35226 326 aa12.49□□□□□ -0.41
COL4A1-204ENST00000543140 GLMPQ8WWB7 406 aa12.49□□□□□ -0.41
COL4A1-204ENST00000543140 C16orf92Q96LL3 132 aa12.49□□□□□ -0.41
COL4A1-204ENST00000543140 NDUFAF3Q9BU61 184 aa12.48□□□□□ -0.41
COL4A1-204ENST00000543140 CR1P17927 2039 aa12.48□□□□□ -0.41
COL4A1-204ENST00000543140 FAM181BA6NEQ2 426 aa12.48□□□□□ -0.41
COL4A1-204ENST00000543140 NDUFA4O00483 81 aa12.48□□□□□ -0.41
COL4A1-204ENST00000543140 IGLV1-40P01703 118 aa12.48□□□□□ -0.41
COL4A1-204ENST00000543140 ZNF575Q86XF7 245 aa12.48□□□□□ -0.41
COL4A1-204ENST00000543140 FABP5P3A8MUU1 101 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 H3BUA1 57 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 C10orf99Q6UWK7 81 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 VAMP8Q9BV40 100 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 CLEC5AQ9NY25 188 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 CREBBPQ92793 2442 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 IGKV3-7A0A075B6H7 116 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 KIR2DL5BA0A0G2JN68 375 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 KIR2DL5BA0A0G2JPC4 375 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 RBAKDNA6NC62 111 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 RPL11P62913 178 aaKnown RBP12.47□□□□□ -0.41
COL4A1-204ENST00000543140 EBLN2Q6P2I7 272 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 KIR2DL5AQ8N109 375 aa12.47□□□□□ -0.41
COL4A1-204ENST00000543140 LINC00614P0C842 121 aa12.46□□□□□ -0.41
COL4A1-204ENST00000543140 TMEM78Q5T7P6 136 aa12.46□□□□□ -0.41
COL4A1-204ENST00000543140 FER1L6-AS1Q8NA97 138 aa12.46□□□□□ -0.41
COL4A1-204ENST00000543140 C20orf173Q96LM9 149 aa12.46□□□□□ -0.41
COL4A1-204ENST00000543140 SNHG12Q9BXW3 62 aa12.46□□□□□ -0.41
COL4A1-204ENST00000543140 NPFFR1Q9GZQ6 430 aa12.46□□□□□ -0.41
COL4A1-204ENST00000543140 A0A1B0GW15 77 aa12.46□□□□□ -0.42
COL4A1-204ENST00000543140 TM4SF20Q53R12 229 aa12.46□□□□□ -0.42
COL4A1-204ENST00000543140 AMN1Q8IY45 258 aa12.46□□□□□ -0.42
COL4A1-204ENST00000543140 ATOH7Q8N100 152 aa12.46□□□□□ -0.42
COL4A1-204ENST00000543140 BRI3O95415 125 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 CFHR3Q02985 330 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 TWIST1Q15672 202 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 IGHV1-24A0A0C4DH33 117 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 A0A0G2JLM5 398 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 DEFB1P60022 68 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 Q6ZQT7 251 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 GPHB5Q86YW7 130 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 ZNF738Q8NE65 137 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 C2orf88Q9BSF0 95 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 APCP25054 2843 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 TLN2Q9Y4G6 2542 aa12.45□□□□□ -0.42
COL4A1-204ENST00000543140 J3QLI3 93 aa12.44□□□□□ -0.42
COL4A1-204ENST00000543140 G0S2P27469 103 aa12.44□□□□□ -0.42
COL4A1-204ENST00000543140 GATD1Q8NB37 220 aa12.44□□□□□ -0.42
COL4A1-204ENST00000543140 MSRB1Q9NZV6 116 aa12.44□□□□□ -0.42
COL4A1-204ENST00000543140 TIMM8BQ9Y5J9 83 aaPredicted RBP12.44□□□□□ -0.42
COL4A1-204ENST00000543140 IGHV4-31P0DP07 118 aa12.44□□□□□ -0.42
COL4A1-204ENST00000543140 EDN2P20800 178 aa12.44□□□□□ -0.42
COL4A1-204ENST00000543140 RPS20P60866 119 aaKnown RBP12.44□□□□□ -0.42
COL4A1-204ENST00000543140 LOXL1Q08397 574 aaPredicted RBP12.44□□□□□ -0.42
COL4A1-204ENST00000543140 LINC00173Q6ZV60 143 aa12.44□□□□□ -0.42
COL4A1-204ENST00000543140 CHCHD1Q96BP2 118 aaKnown RBP12.44□□□□□ -0.42
COL4A1-204ENST00000543140 D6R8Y8 96 aa12.43□□□□□ -0.42
COL4A1-204ENST00000543140 IGLC6P0CF74 106 aa12.43□□□□□ -0.42
COL4A1-204ENST00000543140 Q5PR19 223 aa12.43□□□□□ -0.42
COL4A1-204ENST00000543140 ZNF493Q6ZR52 646 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms