RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	MRPL53	Q96EL3	112 aa	Known RBP	4.25	□□□□□ -1.73
CD44-231	ENST00000531110		Q96M85	177 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	LSM7	Q9UK45	103 aa	Known RBP	4.25	□□□□□ -1.73
CD44-231	ENST00000531110	KIF26B	Q2KJY2	2108 aa		4.25	□□□□□ -1.73
CD44-231	ENST00000531110	IGHV1-58	A0A0C4DH39	117 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	TRBV5-4	A0A0C4DH59	114 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	UBE2L5P	A0A1B0GUS4	154 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	PLAC8L1	A1L4L8	177 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	C19orf71	A6NCJ1	209 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	LINC01546	A6NGU7	62 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	NCBP2L	A6PVI3	153 aa	Known RBP	4.24	□□□□□ -1.73
CD44-231	ENST00000531110	KNCN	A6PVL3	124 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	PRSS46	E5RG02	174 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	SCRG1	O75711	98 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	TCL1B	O95988	128 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110		P01737	135 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	HBD	P02042	147 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	ZNF136	P52737	540 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	RPL18	Q07020	188 aa	Known RBP	4.24	□□□□□ -1.73
CD44-231	ENST00000531110	IGFL2	Q6UWQ7	119 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	NOTCH2NL	Q7Z3S9	236 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	CNRIP1	Q96F85	164 aa	Predicted RBP	4.24	□□□□□ -1.73
CD44-231	ENST00000531110	EMC6	Q9BV81	110 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	OTOR	Q9NRC9	128 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	EPDR1	Q9UM22	224 aa		4.24	□□□□□ -1.73
CD44-231	ENST00000531110	PLXNB3	Q9ULL4	1909 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110	TRAV8-1	A0A0A6YYK1	113 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110		A0A0J9YW62	118 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110	TRBV10-2	A0A0K0K1G8	114 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110		K7EQS6	105 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110	CDX4	O14627	284 aa	Predicted RBP	4.23	□□□□□ -1.73
CD44-231	ENST00000531110	MRPS12	O15235	138 aa	Known RBP	4.23	□□□□□ -1.73
CD44-231	ENST00000531110	CCL16	O15467	120 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110	LYPD3	O95274	346 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110	APOH	P02749	345 aa	Predicted RBP	4.23	□□□□□ -1.73
CD44-231	ENST00000531110	FBXW4	P57775	412 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110	HBB	P68871	147 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110	FAM104B	Q5XKR9	115 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110	SLC48A1	Q6P1K1	146 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110	SRSF12	Q8WXF0	261 aa	Known RBP	4.23	□□□□□ -1.73
CD44-231	ENST00000531110	ZNF71	Q9NQZ8	489 aa	Predicted RBP	4.23	□□□□□ -1.73
CD44-231	ENST00000531110	LINC00527	Q9UJ94	153 aa		4.23	□□□□□ -1.73
CD44-231	ENST00000531110	RPUSD1	Q9UJJ7	312 aa	Known RBP	4.23	□□□□□ -1.73
CD44-231	ENST00000531110	PGP	A6NDG6	321 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110		H3BMM0	161 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110	SYNGR2	O43760	224 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110	IGLV3-25	P01717	112 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110	MLF2	Q15773	248 aa	Predicted RBP	4.22	□□□□□ -1.73
CD44-231	ENST00000531110	CST6	Q15828	149 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110	MAPKAPK5-AS1	Q8N8E1	139 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110	UBE2W	Q96B02	151 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110	ZNF414	Q96IQ9	312 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110	NXT2	Q9NPJ8	142 aa	Known RBP	4.22	□□□□□ -1.73
CD44-231	ENST00000531110	TMEM167B	Q9NRX6	74 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	4.22	□□□□□ -1.73
CD44-231	ENST00000531110	SLC25A15	Q9Y619	301 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110	RAI1	Q7Z5J4	1906 aa	Predicted RBP	4.22	□□□□□ -1.73
CD44-231	ENST00000531110	SCN3A	Q9NY46	2000 aa		4.22	□□□□□ -1.73
CD44-231	ENST00000531110	NDUFB3	O43676	98 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	NDUFS5	O43920	106 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	SRSF10	O75494	262 aa	Known RBP	4.21	□□□□□ -1.74
CD44-231	ENST00000531110	IGKV1D-33	P01593	117 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	IGKV1-33	P01594	117 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	IGHV4-31	P0DP07	118 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	SLC25A16	P16260	332 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	EFNA4	P52798	201 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	SUB1	P53999	127 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
CD44-231	ENST00000531110	FKBP1A	P62942	108 aa	Known RBP	4.21	□□□□□ -1.74
CD44-231	ENST00000531110	ATXN8	Q156A1	80 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	DAND5	Q8N907	189 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	VSIG2	Q96IQ7	327 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	C1orf147	Q96MC9	270 aa	Predicted RBP	4.21	□□□□□ -1.74
CD44-231	ENST00000531110	DEFB127	Q9H1M4	99 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	LINC00597	Q9H2U6	94 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	TAS2R4	Q9NYW5	299 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	F11R	Q9Y624	299 aa	Known RBP	4.21	□□□□□ -1.74
CD44-231	ENST00000531110		R4GMQ9	66 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	TDRD6	O60522	2096 aa	Known RBP	4.21	□□□□□ -1.74
CD44-231	ENST00000531110	KIAA1549L	Q6ZVL6	1849 aa		4.21	□□□□□ -1.74
CD44-231	ENST00000531110	IGHV4-4	A0A075B6R2	117 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110		A0A087WW49	117 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	hADV29S1	A0JD25	119 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	CPSF4L	A6NMK7	179 aa	Known RBP	4.2	□□□□□ -1.74
CD44-231	ENST00000531110	NTN3	O00634	580 aa	Predicted RBP	4.2	□□□□□ -1.74
CD44-231	ENST00000531110	SS18L1	O75177	396 aa	Predicted RBP	4.2	□□□□□ -1.74
CD44-231	ENST00000531110	MAGEA5	P43359	124 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	MFAP2	P55001	183 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	DAZ2	Q13117	558 aa	Known RBP	4.2	□□□□□ -1.74
CD44-231	ENST00000531110	TMEM52B	Q4KMG9	183 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	SCGB1D4	Q6XE38	83 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	ZNF497	Q6ZNH5	498 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	LINC00305	Q7Z4B0	112 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	DAZ4	Q86SG3	579 aa	Known RBP	4.2	□□□□□ -1.74
CD44-231	ENST00000531110	LINC01561	Q8N1V8	128 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	LY6G5B	Q8NDX9	201 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	NT5C	Q8TCD5	201 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	IGF2BP2-AS1	Q96M15	143 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	WFDC6	Q9BQY6	131 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	TM2D3	Q9BRN9	247 aa		4.2	□□□□□ -1.74
CD44-231	ENST00000531110	DAZ3	Q9NR90	486 aa	Known RBP	4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms