RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 OR2D3Q8NGH3 330 aa15.75■□□□□ 0.11
VPS28-209ENST00000528142 Q8TAT8 98 aa15.75■□□□□ 0.11
VPS28-209ENST00000528142 YAE1D1Q9NRH1 226 aa15.75■□□□□ 0.11
VPS28-209ENST00000528142 CLEC5AQ9NY25 188 aa15.75■□□□□ 0.11
VPS28-209ENST00000528142 SMPXQ9UHP9 88 aa15.75■□□□□ 0.11
VPS28-209ENST00000528142 SOCS3O14543 225 aa15.75■□□□□ 0.11
VPS28-209ENST00000528142 ERCC8Q13216 396 aa15.75■□□□□ 0.11
VPS28-209ENST00000528142 S100A8P05109 93 aa15.74■□□□□ 0.11
VPS28-209ENST00000528142 CT45A10P0DMU9 189 aa15.74■□□□□ 0.11
VPS28-209ENST00000528142 GPR61Q9BZJ8 451 aa15.74■□□□□ 0.11
VPS28-209ENST00000528142 A0A1B0GXF2 115 aa15.73■□□□□ 0.11
VPS28-209ENST00000528142 DNAJC9-AS1A6NH13 148 aa15.73■□□□□ 0.11
VPS28-209ENST00000528142 FOXA3P55318 350 aaPredicted RBP15.73■□□□□ 0.11
VPS28-209ENST00000528142 C16orf92Q96LL3 132 aa15.73■□□□□ 0.11
VPS28-209ENST00000528142 CYSRT1A8MQ03 144 aa15.73■□□□□ 0.11
VPS28-209ENST00000528142 HLA-DQA1P01909 254 aa15.73■□□□□ 0.11
VPS28-209ENST00000528142 GDF5OSQ5U4N7 250 aa15.73■□□□□ 0.11
VPS28-209ENST00000528142 ATP5L2Q7Z4Y8 100 aa15.73■□□□□ 0.11
VPS28-209ENST00000528142 C20orf173Q96LM9 149 aa15.73■□□□□ 0.11
VPS28-209ENST00000528142 UFC1Q9Y3C8 167 aa15.73■□□□□ 0.11
VPS28-209ENST00000528142 EDN2P20800 178 aa15.72■□□□□ 0.11
VPS28-209ENST00000528142 RBPMS2Q6ZRY4 209 aaKnown RBP15.72■□□□□ 0.11
VPS28-209ENST00000528142 AGPAT4-IT1Q9H0P7 198 aa15.72■□□□□ 0.11
VPS28-209ENST00000528142 FAM181BA6NEQ2 426 aa15.71■□□□□ 0.11
VPS28-209ENST00000528142 SH2D1AO60880 128 aa15.71■□□□□ 0.11
VPS28-209ENST00000528142 GZMBP10144 247 aa15.71■□□□□ 0.11
VPS28-209ENST00000528142 PDZD11Q5EBL8 140 aa15.71■□□□□ 0.11
VPS28-209ENST00000528142 FAM162BQ5T6X4 162 aa15.71■□□□□ 0.11
VPS28-209ENST00000528142 PGLYRP4Q96LB8 373 aa15.71■□□□□ 0.11
VPS28-209ENST00000528142 NRN1Q9NPD7 142 aa15.71■□□□□ 0.11
VPS28-209ENST00000528142 ESM1Q9NQ30 184 aa15.71■□□□□ 0.11
VPS28-209ENST00000528142 ZNF80P51504 273 aaPredicted RBP15.71■□□□□ 0.1
VPS28-209ENST00000528142 RAB4BP61018 213 aa15.71■□□□□ 0.1
VPS28-209ENST00000528142 Q6ZSV7 163 aa15.71■□□□□ 0.1
VPS28-209ENST00000528142 KLHDC1Q8N7A1 406 aa15.71■□□□□ 0.1
VPS28-209ENST00000528142 IGHV4OR15-8A0A075B7B6 117 aa15.7■□□□□ 0.1
VPS28-209ENST00000528142 A0A087WW49 117 aa15.7■□□□□ 0.1
VPS28-209ENST00000528142 TMEM213A2RRL7 107 aa15.7■□□□□ 0.1
VPS28-209ENST00000528142 C9orf47Q6ZRZ4 202 aa15.7■□□□□ 0.1
VPS28-209ENST00000528142 REC114Q7Z4M0 266 aa15.7■□□□□ 0.1
VPS28-209ENST00000528142 NDFIP1Q9BT67 221 aa15.7■□□□□ 0.1
VPS28-209ENST00000528142 SETXQ7Z333 2677 aaKnown RBP15.69■□□□□ 0.1
VPS28-209ENST00000528142 LY6G6DO95868 133 aa15.69■□□□□ 0.1
VPS28-209ENST00000528142 PPP1R14DQ9NXH3 145 aa15.69■□□□□ 0.1
VPS28-209ENST00000528142 HIVEP1P15822 2718 aa15.69■□□□□ 0.1
VPS28-209ENST00000528142 LGALS9O00182 355 aa15.68■□□□□ 0.1
VPS28-209ENST00000528142 GRIFINA4D1Z8 144 aa15.68■□□□□ 0.1
VPS28-209ENST00000528142 A8MWP6 167 aa15.68■□□□□ 0.1
VPS28-209ENST00000528142 BMI1P35226 326 aa15.68■□□□□ 0.1
VPS28-209ENST00000528142 ZNF138P52744 262 aa15.68■□□□□ 0.1
VPS28-209ENST00000528142 HBBP68871 147 aa15.68■□□□□ 0.1
VPS28-209ENST00000528142 TCTEX1D4Q5JR98 221 aa15.68■□□□□ 0.1
VPS28-209ENST00000528142 HIST1H2BLQ99880 126 aa15.68■□□□□ 0.1
VPS28-209ENST00000528142 APCSP02743 223 aa15.67■□□□□ 0.1
VPS28-209ENST00000528142 CRISP2P16562 243 aa15.67■□□□□ 0.1
VPS28-209ENST00000528142 RPL11P62913 178 aaKnown RBP15.67■□□□□ 0.1
VPS28-209ENST00000528142 SLAQ13239 276 aa15.67■□□□□ 0.1
VPS28-209ENST00000528142 KIAA1644Q3SXP7 199 aa15.67■□□□□ 0.1
VPS28-209ENST00000528142 A0A1B0GUS0 222 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 TMEM189A5PLL7 270 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 S100A2P29034 98 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 HOXD3P31249 432 aaPredicted RBP15.66■□□□□ 0.1
VPS28-209ENST00000528142 CAMPP49913 170 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 SYNJ2BPP57105 145 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 TMEM78Q5T7P6 136 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 C18orf65Q6ZTR6 163 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 ZNF738Q8NE65 137 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 TP53TG3Q9ULZ0 132 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 Q0VG73 95 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 TMEM256Q8N2U0 113 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 C12orf57Q99622 126 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 TMEM160Q9NX00 188 aa15.66■□□□□ 0.1
VPS28-209ENST00000528142 CUBNO60494 3623 aa15.65■□□□□ 0.1
VPS28-209ENST00000528142 HAX1O00165 279 aa15.65■□□□□ 0.1
VPS28-209ENST00000528142 SMIM6P0DI80 62 aa15.65■□□□□ 0.1
VPS28-209ENST00000528142 FABP4P15090 132 aa15.65■□□□□ 0.1
VPS28-209ENST00000528142 SRSF2Q01130 221 aaKnown RBP15.65■□□□□ 0.1
VPS28-209ENST00000528142 ZNF575Q86XF7 245 aa15.65■□□□□ 0.1
VPS28-209ENST00000528142 SELENOKQ9Y6D0 94 aa15.65■□□□□ 0.1
VPS28-209ENST00000528142 FABP5P3A8MUU1 101 aa15.64■□□□□ 0.09
VPS28-209ENST00000528142 OVOL1O14753 267 aa15.64■□□□□ 0.09
VPS28-209ENST00000528142 AMBPP02760 352 aa15.64■□□□□ 0.09
VPS28-209ENST00000528142 Q6AWC8 147 aa15.64■□□□□ 0.09
VPS28-209ENST00000528142 OR10D4PQ8NGN7 298 aa15.64■□□□□ 0.09
VPS28-209ENST00000528142 IGKV3-7A0A075B6H7 116 aa15.64■□□□□ 0.09
VPS28-209ENST00000528142 NUPR1O60356 82 aa15.64■□□□□ 0.09
VPS28-209ENST00000528142 KLF5Q13887 457 aaPredicted RBP15.64■□□□□ 0.09
VPS28-209ENST00000528142 DCANP1Q8TF63 244 aa15.64■□□□□ 0.09
VPS28-209ENST00000528142 SSBP4Q9BWG4 385 aaPredicted RBP15.64■□□□□ 0.09
VPS28-209ENST00000528142 MTORP42345 2549 aa15.63■□□□□ 0.09
VPS28-209ENST00000528142 ZNF705DP0CH99 300 aaPredicted RBP15.63■□□□□ 0.09
VPS28-209ENST00000528142 ZNF705BP0CI00 300 aaPredicted RBP15.63■□□□□ 0.09
VPS28-209ENST00000528142 SRD5A1P18405 259 aa15.63■□□□□ 0.09
VPS28-209ENST00000528142 LINC00310P59036 64 aa15.63■□□□□ 0.09
VPS28-209ENST00000528142 C4orf3Q8WVX3 66 aa15.63■□□□□ 0.09
VPS28-209ENST00000528142 TMSB15BA0A087X1C1 80 aa15.62■□□□□ 0.09
VPS28-209ENST00000528142 A0A1B0GUT8 65 aa15.62■□□□□ 0.09
VPS28-209ENST00000528142 RPS20P60866 119 aaKnown RBP15.62■□□□□ 0.09
VPS28-209ENST00000528142 LINC00477Q96M19 166 aa15.62■□□□□ 0.09
VPS28-209ENST00000528142 LENEPQ9Y5L5 61 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 130.1 ms